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Endogenous auto-fluorescent biological markers for assessing a biological parameter of a cell

a cell and autofluorescence technology, applied in the field of endogenous autofluorescent biological markers for assessing the biological parameter of a cell, can solve the problems of inability to perform real-time optimization, difficult to quantify the parameters of a cell culture, and generally long and costly methods

Inactive Publication Date: 2012-01-19
SCOPRA SCI & GENIE SEC
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

"The patent text describes a method for determining biological parameters of a cell using an endogenous auto-fluorescent biological marker. The method involves quantifying the fluorescent signal associated with the marker and estimating the biomass concentration or cellular concentration of the cell based on the fluorescent signal. The endogenous auto-fluorescent biological marker can be associated with tryptamine, riboflavin, FAD, or a combination of riboflavin and FAD. The method can be used in a liquid medium containing the cell, and the fluorescent signal can be filtered or suspended in a neutral liquid prior to quantification. The biological parameters that can be determined include biomass concentration, cellular concentration, and cellular proliferation rate."

Problems solved by technology

However, some parameters of a cell culture are very difficult to quantify because there is only a limited number of methods for measuring them during laboratory experimentation or industrial production.
These methods are generally lengthy and costly processes and cannot be performed in real time.
This strategy does not accommodate real time optimization of cell cultures and results in important economic loss.
However, it is virtually impossible to determine in real time other important parameters of the cell culture such as cellular proliferation, physiological state, consumption of nutrients, production of a by-product, etc
Even though the use of endogenous fluorescence to determine the status of a cell culture has proved to be difficult, some research teams have published their efforts toward the understanding of this subject.
However, Hisiger and Jolicoeur also add that “the presence of some unidentified fluorescence signals that are overlapping the ones of interest are limiting the applicability and the reliability of this type of probe”.
For example, it does not provide information about the metabolic behavior of the cells in culture (ex.

Method used

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  • Endogenous auto-fluorescent biological markers for assessing a biological parameter of a cell
  • Endogenous auto-fluorescent biological markers for assessing a biological parameter of a cell
  • Endogenous auto-fluorescent biological markers for assessing a biological parameter of a cell

Examples

Experimental program
Comparison scheme
Effect test

example i

Determination of Endogenous Biological Markers

[0072]Calibration of the spectrophotometer. For each marker tested, a 500 μM aqueous solution was prepared with pure chemicals. Each sample of candidate marker was scanned in 3D (λexcitation, λemission, Relative Fluorescent Unit or RFU) using a Saphire2 (Tecan) spectrophotometer with excitation and emission wavelengths starting from 50 nm under the theoretical wavelengths of the candidate marker (i.e. excitation and emission wavelengths associated to the peak from the literature) to 50 nm over the theoretical wavelengths. If the reading of the signal is over, the reading gain was adjusted or the original solution was diluted until a clear signal was obtained. This enabled the identification of the excitation and emission wavelength corresponding to the maximal amplitude reading for each peak of the candidate marker.

[0073]Optical imprint of the biological marker. The solutions of the markers tested were also scanned in 3D (λexcitation, λe...

example ii

Corrolation of the Endogenous Auto-Fluorescent Biological Marker with Various Biological Parameters

[0080]Biomass concentration. Three fluorescent signals associated with specific biological markers have been identified as being representative of the biomass concentration: tryptamine (λexcitation 230, λemission 352), FAD (λexcitation 431, λemission 535) and riboflavin and FAD (λexcitation 452, λemission 532). As shown in FIG. 1, the three markers can be used to estimate accurately the biomass concentration. They can also be used to estimate the biomass concentration as a function of time. Further, all three markers correlate with a growth phase of the cell culture.

[0081]Cellular concentration. Four fluorescent signals associated with specific biological markers have been identified as being representative of the cellular concentration: FAD from the suspension (λexcitation 368, λemission 526), riboflavin from the suspension (λexcitation 368, λemission 532), FAD from the filtrate (λex...

example iii

Use of the Endogenous Biological Markers in Other Biological Systems

[0084]Arabidopsis thaliana. In order to prepare the MS medium, 500 mL water was poured in a graduated cylinder and stirred. Then, sequentially, 6.45 g of MS salts, 0.885 g of MES, 45 g of sucrose, 1.5 mL of B5 vitamins, 0.3 mL of 2,4-D solution (4.4 mM) were added to the stirring water. The volume of the solution was adjusted to 1 L with water and the solution was stirred to obtain the dissolution of the chemicals. The pH of the solution was the adjusted to 5.7 using a 1M KOH solution. The solution was then sterilized (autoclaved 15 min, 121° C. and 15 psig) for use in the cell culture. Every 7 days, a 15 mL of a two-week old cell culture was added to 30 mL of fresh medium. The cells were cultured for 7 days under constant agitation (120 RPM) at 25° C. Aliquots were taken at various intervals. Fluorescent readings were performed on the cell suspensions only. The determination of fluorescence as well as the determina...

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Abstract

The present application relates to the use of endogenous fluorescent biological markers to determine a biological parameter of a cell in a liquid. The methods provided herein provide accurate results in a relatively short amount of time and can be used to monitor and optimize cell culture online as well as determining the presence of a cellular contamination in a cell suspension.

Description

CROSS-REFERENCE TO RELATED APPLICATIONS[0001]This application claims priority from U.S. provisional patent applications 61 / 106,176 and 61 / 106,181 both filed on Oct. 17, 2009 and both herewith incorporated by reference in their entirety.BACKGROUND[0002]In order to control and optimize a cell culture, different parameters (growth curves, consumption / depletion of nutrients, production / accumulation of by products (which are usually toxic), determination of physiological state) must be determined at various stages. However, some parameters of a cell culture are very difficult to quantify because there is only a limited number of methods for measuring them during laboratory experimentation or industrial production. Usually, samples of the cell cultures are analyzed with conventional techniques (filtration, drying, cell counting, HPLC). These methods are generally lengthy and costly processes and cannot be performed in real time. Consequently, in industrial settings, cells are generally cu...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): C12Q1/02
CPCG01N33/582G01N33/487C12Q1/02G01N21/6408G01N21/6486C12Q1/06G01N21/6428G01N21/6458G01N2021/6491
Inventor SIROIS, JOELBIZIER, EMMANUELCARDIN-BERNIER, GUILLAUME
Owner SCOPRA SCI & GENIE SEC