RT-PCR kit for detection of poultry source pedigree H3N2 subtype canine influenza virus and application thereof
A canine influenza virus, H3N2 technology, applied in the direction of DNA / RNA fragments, recombinant DNA technology, microbial-based methods, etc., can solve the problems of inability to make rapid diagnosis, virus antigenic variation, and inability to detect viruses, etc., to achieve good results The effects of coverage and versatility, prevention of influenza pandemic, and simple operation
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Embodiment 1
[0047] Embodiment 1, the design of specific primer pair
[0048] Using primer premier5.0, primers were designed for the highly conserved region gene of the H3N2 subtype canine influenza virus HA gene of the avian lineage.
[0049] Primers are as follows:
[0050] Upstream primer H3N2-HA-601F: 5'-CCAAGCACTAATCAAGAACAAACC-3' (SEQ ID No.1)
[0051] Downstream primer H3N2-HA-1089R: 5'-TACCATCCCTTCCCATCCATTTTCT-3' (SEQ ID No.2)
Embodiment 2
[0052] Example 2. Detection of the specificity of H3N2 subtype canine influenza virus of avian origin
[0053] The tested samples were H3N2 canine influenza virus of avian origin (A / canine / Beijing / 364 / 2009), seasonal H3N2 human influenza virus (A / Jiangxi / 262 / 2005), H3N8 canine influenza virus of horse origin (A / canine / California / 70645-4 / 2006), H1N1 canine influenza virus (A / canine / Beijing / cau9 / 2009), processed negative swab samples and double distilled water negative control solution.
[0054] 1. Extraction of total RNA by Trizol method
[0055] (1) Take 300 μl of each sample, add 900 μl Trizol to each tube, and gently invert and mix 10 times.
[0056] (2) Add 200 μl of chloroform, invert and mix 10 times, and ice-bath for 5-10 minutes, during which time gently invert and mix. Centrifuge at 13000rpm for 15min at 4°C.
[0057] (3) Transfer 700 μl of the supernatant into a new centrifuge tube, add an equal amount of isopropanol, and gently invert to mix. After mixing, place ...
Embodiment 3
[0078] Example 3. Detection of sensitivity of avian-derived lineage H3N2 subtype canine influenza virus
[0079] The detection samples of H3N2 subtype canine influenza virus of avian origin were: A / canine / Beijing / 364 / 2009(H3N2), A / canine / Beijing / 253 / 2009(H3N2), A / canine / Beijing / 305 / 2009( H3N2), A / canine / Beijing / 420 / 2010(H3N2), A / canine / Beijing / 511 / 2010(H3N2), A / canine / Liaoning / 1578 / 2010(H3N2), A / canine / Liaoning / 1585 / 2010 (H3N2), A / canine / Beijing / 1215 / 2012 (H3N2), A / canine / Beijing / 0108 / 2013 (H3N2).
[0080] 1. Extraction of total RNA by Trizol method
[0081] Extract the total RNA of the test sample, and the method is the same as step 1 in Example 2.
[0082] 2. Synthesis of cDNA by reverse transcription
[0083] The method is the same as step 2 in Example 2.
[0084] 3. PCR amplification
[0085] The method is the same as Step 3 in Example 2.
[0086] 4. Agarose gel electrophoresis
[0087] The method is the same as Step 4 in Example 2.
[0088]Electrophoresis results...
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