Non-small cell lung cancer targeted therapy gene detection method
A technology for non-small cell lung cancer and targeted therapy, applied in biochemical equipment and methods, microbial measurement/inspection, etc., can solve problems such as low throughput, difficult interpretation of results, poor repeatability, etc.
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Embodiment 1
[0067] The sample used was fresh biopsy tissue of non-small cell lung cancer, and the genomic DNA in the fresh biopsy tissue of lung cancer was extracted with a DNA extraction kit, and the extracted genomic DNA was amplified by multiplex PCR using SEQ No. Illumina NextSeq 500 sequencer for sequencing analysis, the specific implementation method is as follows:
[0068] A. Genomic DNA extraction: Use the Qiagen DNeasy Blood&Tissue Kit to extract genomic DNA according to the kit instructions. The obtained genomic DNA is subjected to gel electrophoresis and quality detection using NanoDrop 2000. It is required that the genomic DNA is not significantly degraded, the concentration is greater than 20ng / μL, A260 / A280>1.8, A260 / A230>2.0, and Agilent Bioanalyzer 2100 is used for accurate quantification .
[0069]B. Multiplex PCR amplification: Use SEQ No.1 to SEQ No.96 to perform multiplex PCR amplification on 10ng of genomic DNA to obtain AKT1, ALK, BRAF, EGFR, ERBB4, FGFR1, FGFR2, FG...
Embodiment 2
[0082] Using primers from SEQ No.1 to SEQ No.96, multiplex PCR amplification was performed on the genomic DNA extracted from paraffin-embedded non-small cell lung cancer tissues. Sequencing analysis, the specific implementation method is as follows:
[0083] A. Genomic DNA extraction: Use the Invitrogen MagMAX FFPE DNA Isolation Kit to extract the genomic DNA from paraffin-embedded tissues according to the manufacturer's recommended operating procedures. The quality of the obtained genomic DNA was tested using a Qubit 3.0 fluorometer, and the concentration was required to be greater than 20ng / μL, A260 / A280>1.8, and A260 / A230>2.0. Included on the genomic DNA are those required for the present invention.
[0084] B. Multiplex PCR amplification: 466 mutation sites contained in the 12 target genes of AKT1, ALK, BRAF, EGFR, ERBB4, FGFR1, FGFR2, FGFR3, KRAS, MET, PIK3CA and PTEN on the genomic DNA in step A The region was amplified by multiplex PCR using primers SEQ No.1 to SEQ No...
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