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Conditional gene knockout method constructed by using CRISPR/Cas9 system

A conditional and genetic technology, applied in the field of gene knockout, can solve the problems of homology arm length, affect the efficiency of conditional gene knockout, and low recombination efficiency, so as to improve the success rate, save time and labor costs, and improve efficiency. Effect

Active Publication Date: 2018-08-24
SUZHOU UNIV
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  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Therefore, this step requires a lot of time and effort, and is the rate-limiting step for conditional knockout of genes using the Cre / loxP system
[0008] (2) Cre enzyme, as an exogenous recombinase expressed in mammals, has certain potential toxicity, which can cause problems such as abnormal cell proliferation, DNA mismatch and chromosome deletion
[0011] In short, the traditional recombinase-mediated gene conditional knockout, which uses gene recombination under natural conditions, has low recombination efficiency
The traditional Cre / loxP system inserts the loxP site into the genome, the homology arms are long, and the efficiency of homologous recombination is low, which greatly affects the efficiency of gene conditional knockout

Method used

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  • Conditional gene knockout method constructed by using CRISPR/Cas9 system
  • Conditional gene knockout method constructed by using CRISPR/Cas9 system
  • Conditional gene knockout method constructed by using CRISPR/Cas9 system

Examples

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Embodiment 1

[0049] The present embodiment provides a method for selectively knocking out the Eed gene (gene of interest) in mouse embryonic stem cells (cell of interest), specifically comprising the following steps:

[0050] (1) Construction of the left targeting plasmid of the Eed gene: select the LNL sequence to be inserted at the appropriate position upstream of exon 2 of the Eed gene, select the left and right homology arms ranging from 500bp to 1kb for the upstream and downstream of the site, and use high-fidelity Phusion DNA polymerase (M0530S, NEB) amplifies the left and right homology arms of the LNL sequence to be inserted, and then purifies it with AxyPrep PCR purification kit. The left arm uses KpnⅠ and EcoRI restriction endonucleases to digest the PCR product, and the right arm uses BamHI and SacⅡ digested, inserted into the plasmid containing the LNL sequence, and constructed the targeting plasmid on the left side of the target gene.

[0051] (2) Use the website http: / / crispr...

Embodiment 2

[0060] This embodiment provides a method for conditionally knocking out the SRCAP gene (gene of interest) in mouse embryonic stem cells (cell of interest), specifically comprising the following steps:

[0061] (1) Construction of the LNL targeting plasmid on the left side of the SRCAP gene knockout region: select exons 5-8 of the SRCAP gene as the target knockout region, and use a position upstream of exon 5 as the LNL insertion site. First, use the mouse genome as a template, use Pusion high-fidelity DNA polymerase to amplify the left and right homology arms of 500bp to 1kb in size upstream and downstream of the insertion site, and then use AxyPrep PCR purification kit to purify; then restrict with KpnⅠ and EcoRI The left-arm PCR purified product was digested with a neutral endonuclease, and the right arm was digested with BamHI and SacII, and then the two homologous arms were sequentially connected to the LNL vector to obtain the LNL plasmid targeting the left side of the tar...

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Abstract

The invention relates to a conditional gene knockout method constructed by using a CRISPR / Cas9 system. LoxP-antibiotic-LoxP and FRT-antibiotic-FRT-LoxP sequence insertion sites are selected from leftand right sides of a to-be-knocked-out area respectively; left and right homologous arms are selected from upstream and downstream positions of to-be-inserted sites, amplification, purification, enzyme digestion, linking and conversion are performed, and left and right targeting plasmids are obtained; Cas9 plasmid, the left or right targeting plasmid of the knockout area and corresponding gRNA expression plasmids are sequentially or simultaneously introduced into cells, screening is performed with antibiotics after transfection, and target cells with left and right targeting sequences insertedare screened out simultaneously; 4-OHT and DOX are used for inducing Cre-LoxP and FLP-FRT medicated homologous recombination, so that loxp sites are introduced in left and right sides of the to-be-knocked-out area; 4-OHT is used for inducing Cre-LoxP medicated homologous recombination, and cloning of target fragment knockout is obtained.

Description

technical field [0001] The invention relates to the technical field of gene knockout, in particular to a gene conditional knockout method constructed using CRISPR / Cas9 and Cre-LoxP systems. Background technique [0002] Gene knockout technology is an irreplaceable part in the construction of transgenic animals. The expression of genes is specific in time and space, and gene editing such as knockout and replacement of key genes in the body often leads to the death of animal embryos and hinders the study of gene function. The emergence of the conditional knockout method has solved the above-mentioned problems, allowing the expression or deletion of the target gene to occur at a specific stage of animal development or in a specific tissue or organ. As a new generation of gene knockout technology, conditional gene knockout technology can realize the specific expression of genes in space and time, and has obvious advantages and broad application prospects compared with constitut...

Claims

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Application Information

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IPC IPC(8): C12N15/90C12N15/85
CPCC12N9/22C12N15/85C12N15/907C12N2800/107C12N2800/30C12N2810/10
Inventor 任文燕戴红霞武龙飞张文胜
Owner SUZHOU UNIV
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