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Embryonic cell-based therapeutic candidate screening systems, models for huntington's disease and uses thereof

A Huntington's disease, human embryonic stem cell technology, applied in embryonic cells, drug screening, animal cells, etc., can solve problems such as heterogeneity of human systems, difficulty in explaining comparative studies, and different differentiation potentials

Active Publication Date: 2018-12-21
THE ROCKEFELLER UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, unlike the highly inbred mouse, the human system displays heterogeneity in the genetic background, making comparative studies difficult to interpret and generalize from individual cases
However, human iPSCs have been used to model human diseases, and although hiPSCs are a general model, their major drawbacks include: incomplete reprogramming, genomic instability, and different differentiation potentials depending on the epigenetic memory from which they originate
In addition, since these cells are derived from patients with mutations throughout their lifetime, there may be intrinsic alterations that impair cellular homeostasis

Method used

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  • Embryonic cell-based therapeutic candidate screening systems, models for huntington's disease and uses thereof
  • Embryonic cell-based therapeutic candidate screening systems, models for huntington's disease and uses thereof
  • Embryonic cell-based therapeutic candidate screening systems, models for huntington's disease and uses thereof

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0346] Generation of human embryonic stem cell lines as screening and research tools

[0347] As described in the Background section, Huntington's disease (HD) is a dominant autosomal neurodegenerative disorder caused by mutations that result in the addition of polyQ repeats at the N-terminus of huntingtin (HTT). Even after years of research, current animal models do not accurately represent the pathophysiology of human HD, possibly due to species-specific differences. This has hampered progress in discovering effective candidate therapies for the disease. To provide a human platform as a drug screening and research tool to study HTT function and dysfunction in healthy and >40Q cells, this example describes the use of CRISPR / Cas9 genome editing technology in generating the first isogenic human embryonic stem cell line for HD (and isogenic wild-type controls).

[0348] In this example is described the application of a reverse editing strategy using CRISPR-Cas9 to introduce a ...

Embodiment 2

[0362] HTT extension leads to isogenic hESC transcriptome alterations

[0363] Since the HD ESC cell line is the first generation isogenic hESC modeling aspect of HD, Applicants sought to perform a comparative analysis of lines grown under exactly the same conditions and simultaneously perform transcriptome RNA-seq analysis.

[0364] Since RUES2 and RUES2-Q150 share the same genetic background, applicants had the opportunity to explore whether a simple addition of polyQ could produce transcriptional differences between the two lines. In order to solve this problem, the applicants of the present invention performed comparative RNA-seq analysis in two replicates. The presence of HTT spliced ​​isoforms was first examined, and the question was explored whether polyQ chain addition affected HTT mRNA isoform expression. Consistent with previous observations in mice and humans, a highly enriched HTT isoform of approximately 2 kb was detected, caused solely by exon-1 to intron-1 read...

Embodiment 3

[0375] HTT expansion leads to changes in isogenic hESC metabolite profiles

[0376] Simultaneously with RNA-seq and for samples grown under the exact same pluripotency conditions, comparative non-targeted liquid chromatography / mass spectrometry (LC / MS) metabolite profiling of RUES2 and RUES2-Q150 cells was performed. Spectral data were acquired at the level of hydrophilic metabolites contributing to intermediary metabolism using aqueous normal phase LC and negative and positive ion MS detection for broad potential shift coverage. Three independent cultures of RUES2 and RUES2-Q150 were analyzed separately as 5 technical experimental replicates. Overall, this metabolomic analysis examined 2693 molecular features with 50-1000 Da / e mass / charge (m / z) ratios. Among these substances, 1196 are quantitatively negative ions ( image 3 A and image 3 C), 1497 detected as positive ions ( image 3 B and image 3 D). Principal component analysis (PCA) and unsupervised hierarchical clu...

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Abstract

Compositions and methods disclosed concern an isogenic population of in vitro human embryonic stem cells comprising a disease form of the Huntingtin gene (HTT) at the endogenous HTT gene locus in thegenome of the cell; wherein the disease form of the HTT gene comprises a polyQ repeat of at least 40 glutamines at the N-terminus of the Huntingtin protein (HTT). The cell lines of the disclosure comprise genetically-defined alterations made in the endogenous HTT gene that recapitulate Huntington's Disease in humans. Furthermore, the cell lines have isogenic controls that share a similar genetic background. Differentiating cell lines committed to a neuronal fate and fully differentiated cell lines are also provided and they also display phenotypic abnormalities associated with the length of the polyQ repeat of the HTT gene. These cell lines are used as screening tools in drug discovery and development to identify substances that fully or partially revert these phenotype abnormalities.

Description

[0001] background of the invention [0002] government rights [0003] The invention disclosed herein was made in part with government support under Grant Nos R01 GM101653 and R01 HD080699 awarded by the National Institutes of Health. The US Government has certain rights in this invention. [0004] related application [0005] This international patent application claims priority to U.S. Provisional Patent Application No. 62 / 299,544, filed February 24, 2016, and U.S. Provisional Patent Application No. 62 / 300,056, filed February 25, 2016. The entire disclosure of each of the above provisional patent applications is incorporated by reference. [0006] sequence listing [0007] This patent application contains a Sequence Listing filed electronically in ASCII format, and the Sequence Listing is hereby incorporated by reference in its entirety. Said ASCII copy, created on February 24, 2017, is named 11012-005430-WO0_SL.TXT and is 43,621 bytes in size. technical field [0008...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): A61P25/14A61P25/16C12N15/09C12Q1/02C12Q1/18G01N33/15G01N33/50G01N33/68
CPCC12Q1/02C12Q1/18C12N15/09C12N5/0606C12N2503/02C12N2510/00G01N33/5073A61K31/506A61P25/14A61P25/16C12Q1/025A61K45/06C07K14/47
Inventor 阿里·布里万卢阿尔贝特·罗祖阿莱西娅·德格兰切尔蒂晴枝具视弗雷德·埃托克
Owner THE ROCKEFELLER UNIV
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