Primer, detection kit and detection method for screening SCID genetic diseases

A genetic disease and kit technology, applied in the field of newborn genetic disease genetic screening, can solve problems such as the lack of newborn SCID screening technology system and the lack of clinical symptoms of SCID patients, so as to achieve stable blood card samples and avoid false positives. Positive result, easy storage effect

Pending Publication Date: 2019-03-01
PRIMBIO GENES BIOTECH WUHAN CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, since SCID patients lack clinical symptoms before infection, how to identify early before infection becomes the key
[0005] At present, the United States and other developed countries and my country's Taiwan region have carried out newborn SCID screening work, and the US Centers for Disease Control and Prevention has also included this project in the external quality evaluation system for newborn disease screening, but domestic SCID newborn screening And the corresponding genetic diagnosis and testing work is still in the preliminary stage
At present, there is no report on large-scale SCID screening of neonatal population in China, and no clear neonatal SCID screening technology system has been established. Therefore, it is of great significance to establish a fast, efficient and sensitive SCID screening technology system

Method used

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  • Primer, detection kit and detection method for screening SCID genetic diseases
  • Primer, detection kit and detection method for screening SCID genetic diseases
  • Primer, detection kit and detection method for screening SCID genetic diseases

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0034] Example 1: Specific primers and gene detection kits for SCID genetic disease screening

[0035] 1. Design and synthesis of primers and probes:

[0036] According to the UCSCHumanGeneSorter on the UCSC website to query TRECs and internal reference Cα gene sequences (http: / / genome.ucsc.edu / cgi-bin / hgNear), use Primer3.0 to design fluorescent quantitative PCR upstream and downstream primers and probes on TRECs and Cα genes . The selected primers have good specificity for gene binding and high PCR amplification efficiency. The 5' end of the TRECs probe is a FAM fluorescent group, and the 3' end is a TAMRA fluorescent group; the 5' end of the Cα gene probe is a VIC fluorescent group, and the 3' end is a TAMRA fluorescent group. At the same time, the present invention also sets primers and probes for external control. Primer sequences are shown below.

[0037] TRECs target amplification upstream primer SEQ ID NO.1:

[0038] 5`-gtttttgtaaaggtgcccactcc-3`

[0039] TRECs t...

Embodiment 2

[0070] Embodiment 2: the use of kit in embodiment 1

[0071] 1. Extraction of sample genomic DNA

[0072] (1) Use a 3.0mm hole punch to punch 3 blood cards from the blood card and put them into a 1.5ml EP tube.

[0073] (2) Add 1000 μl ddH2O to the above-mentioned EP tube containing the blood card, vortex and oscillate, let it stand for 15 minutes, centrifuge at 12000 rpm for 2 minutes, discard the supernatant, if the color of the blood film is still very dark, wash it again once.

[0074] (3) Add 200 μl of 5% chelex100 (sigma) solution to the above-mentioned EP tube, shake and centrifuge and incubate at 56°C for 30 minutes, take it out and shake it for 1 minute, then centrifuge it, put it at 100°C for 8 minutes, take it out and shake it vigorously, and centrifuge it at 12000rpm for 2 minutes, take it out Store at 4°C for later use.

[0075] 2. PCR amplification

[0076] Using the two sets of PCR reaction solutions in Example 1, the template DNA obtained in the step 1 was r...

Embodiment 3

[0080] Embodiment 3: sample detection

[0081] 1. Select 4 cases of infant dried blood films with known clinical diagnosis results, and extract sample DNA. The operation is as follows:

[0082] (1) Use a 3.0mm hole punch to punch 3 blood cards from each of the 4 cases of dried blood and put them into 4 corresponding 1.5ml EP tubes.

[0083] (2) Add 1000 μl ddH2O to the above EP tube containing the blood card, vortex and oscillate, let stand for 15 minutes, centrifuge at 12000 rpm for 2 minutes, discard the supernatant, if the color of the blood card is still very dark, repeat washing once.

[0084] (3) Add 200 μl of 5% chelex100 (sigma) solution to each of the above EP tubes, shake and centrifuge and incubate at 56°C for 30 minutes, take it out and shake it for 1 minute, then centrifuge it, put it at 100°C for 8 minutes, take it out and shake it vigorously, and then centrifuge at 12000rpm for 2 minutes. Take it out and put it at 4°C for later use.

[0085] Table 1 Sample inf...

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PUM

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Abstract

The invention relates to a primer, detection kit and detection method for screening SCID genetic diseases. The kit comprises a DNA extract, a PCR MIX reaction solution and upstream and downstream primers and probes for TREC gene amplification, internal reference Calpha gene amplification and external control Calpha gene amplification; the sequences of the upstream and downstream primers for TREC gene amplification are shown as SEQ ID NO.1 and SEQ ID NO.2, and the sequence of the TREC gene probe is shown as SEQ ID NO.3; the sequences of the upstream and downstream primers for the internal reference Calpha gene amplification are shown as SEQ ID NO.4 and SEQ ID NO.5, and the sequence of the internal reference Calpha gene probe is shown as SEQ ID NO.6; the sequences of the upstream and downstream primers for the external control Calpha gene amplification are shown as SEQ ID NO.4 and SEQ ID NO.5, and the sequence of the external control Calpha gene probe is shown as SEQ ID NO.7. The methodis based on a fluorogenic quantitative PCR technology. A chelex100 method is used for dealing with dried blood spots for direct amplification to qualitatively detect T cell receptor deletion loops, and a rapid, efficient and sensitive SCID screening technology system is established. The detection method is convenient in operation, low in cost and easy to popularize.

Description

technical field [0001] The invention belongs to the field of gene screening for genetic diseases of newborns, and in particular relates to a primer, a detection kit and a detection method for screening of SCID genetic diseases. Background technique [0002] Severe combined immunodeficiency disease (SCID) is a deficiency and / or dysfunction of T lymphocytes, B lymphocytes, and NK cells caused by multiple genetic factors, resulting in serious defects in both humoral immunity and cellular immunity. This primary immunodeficiency is often defined as a lack of naive T cells. The incidence of SCID is about 1 / 100,000 live births, but because children with SCID often die before a definite diagnosis, this number may be seriously underestimated. Without treatment, the case fatality rate of SCID is 100%. 95% of children are boys, polymorphic linked recessive inheritance, autosomal recessive inheritance and sporadic cases occasionally. The clinical manifestations are that children have ...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6883C12Q1/6851C12N15/11
CPCC12Q1/6851C12Q1/6883C12Q2600/166
Inventor 王三张旭谭灏文
Owner PRIMBIO GENES BIOTECH WUHAN CO LTD
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