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Kit used for staphylococcus aureus detection

A Staphylococcus aureus and aureus technology, applied in the field of kits for the detection of Staphylococcus aureus, can solve the problems of high cost, delay in disease treatment, inability to distinguish Staphylococcus aureus from other staphylococci, and achieve high specificity , The effect of low equipment requirements

Inactive Publication Date: 2019-08-02
ZHEJIANG UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

The traditional detection method is bacterial culture or combined PCR sequencing, but bacterial culture takes 5-7 days, and PCR often cannot distinguish Staphylococcus aureus from other staphylococci due to the lack of specific primers, so joint generation sequencing is required Can only be identified, the cost is high, and it takes several days to get the result
During this period, clinicians can only use medicines based on experience because they have not obtained test results, which often leads to delays in disease treatment

Method used

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  • Kit used for staphylococcus aureus detection
  • Kit used for staphylococcus aureus detection
  • Kit used for staphylococcus aureus detection

Examples

Experimental program
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Effect test

Embodiment 1

[0016] Embodiment 1: Staphylococcus rpoB gene sequence alignment

[0017] Such as figure 1 As shown, in the rpoB gene sequence of Staphylococcus aureus, the 5' end of the guide RNA sequence (selected part) of the present invention is the PAM structure of TTTN. The guide RNA sequence does not have a completely consistent sequence among Staphylococcus epidermidis, Staphylococcus hominis, Staphylococcus waerii, Staphylococcus capitus, and Staphylococcus hemolyticus, and all have several base differences. Moreover, there is no PAM structure of TTTN at the 5' end of the homologous sequence in Staphylococcus epidermidis, Staphylococcus hominis, Staphylococcus worthii, Staphylococcus capitum, and Staphylococcus hemolyticus. Therefore, the Cas12a protein cannot be targeted by using this guide RNA. To Staphylococcus epidermidis, Staphylococcus hominis, Staphylococcus worthii, Staphylococcus capitis, Staphylococcus hemolyticus, therefore, only Staphylococcus aureus can show positive re...

Embodiment 2

[0018] Embodiment 2: The guide RNA specificity determination of the present invention, the steps are as follows:

[0019] (1) Prepare standard strains of Staphylococcus aureus, Staphylococcus epidermidis, Staphylococcus hominis, Staphylococcus worbachii, Staphylococcus capitis, Staphylococcus hemolyticus;

[0020] (2) Take 1ml of the sample to be tested, heat it at 98 degrees Celsius for 5min, and draw 1μl as the test sample;

[0021] (3) Prepare the reaction system, the reaction system is 25 μl, including 1 μl detection sample, 14.75 μl hydrated TwistAmp basickit reaction drying ball (TwistDx company), 0.9 μl 10mM RPA-F (sequence is SEQ No.2) and RPA-R ( Sequence is SEQNo.3), 0.375 μl Ribonuclease Inhibitor (Takara company), 3.5 μl buffer2.1 (NEB company), 1000nM guide RNA (sequence is SEQ No.1), 250nM Cas12a (NEB company), 200nM single-stranded DNA probe Needle (Shanghai Sangong), add water to make up to 25μl;

[0022] (4) React at a constant temperature of 37 degrees Cels...

Embodiment 3

[0025] Embodiment 3: the detection method based on guide RNA described in the present invention and traditional PCR method specificity and experimental time-consuming comparison

[0026] 1. based on the detection method of guide RNA described in the present invention, the steps are as follows:

[0027] (1) Prepare standard strains of Staphylococcus aureus, Staphylococcus epidermidis, Staphylococcus hominis, Staphylococcus worbachii, Staphylococcus capitis, Staphylococcus hemolyticus;

[0028] (2) Take 1ml of the sample to be tested, heat it at 98 degrees Celsius for 5min, and draw 1μl as the test sample;

[0029] (3) Prepare the reaction system, the reaction system is 25 μl, including 1 μl detection sample, 14.75 μl hydrated TwistAmp basickit reaction drying ball (TwistDx company), 0.9 μl 10mM RPA-F (sequence is SEQ No.2) and RPA-R ( Sequence is SEQNo.3), 0.375 μl Ribonuclease Inhibitor (Takara company), 3.5 μl buffer2.1 (NEB company), 1000nM guide RNA (sequence is SEQ No.1),...

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Abstract

The invention provides a kit used for staphylococcus aureus detection. The kit used for staphylococcus aureus detection contains guide RNA of a specific targeted staphylococcus aureus rpoB gene, an amplification primer pair, hydrated TwistAmp basic kit reaction drying balls, LbCas12a protein, a single-stranded DNA probe (ssDNA), Ribonuclease Inhibitor and buffer liquid. By using the kit for staphylococcus aureus detection, the detection specificity is high, and staphylococcus aureus and other staphylococcus, including staphylococcus epidermidis, staphylococcus hominis, staphylococcus warneri,staphylococcus capitis and staphylococcus haemolyticus, can be separated. Meanwhile, by using a RNA sequence for detection, elapsed time is about 1 hour, no PCR instruments are used, the equipment requirements are low, and are significantly lower than that of a traditional bacterial culture method or PCR sequencing method, and the clinical application valve is large.

Description

technical field [0001] The invention belongs to the field of detection of pathogenic bacteria, and relates to a kit for detection of Staphylococcus aureus, comprising a guide RNA specifically targeting the rpoB gene of Staphylococcus aureus, a pair of RPA amplification primers, and a hydrated TwistAmpbasic kit Reaction dry balls, LbCas12a protein, single-stranded DNA probe (ssDNA), Ribonuclease Inhibitor, and buffer. This kit can be used for rapid detection of Staphylococcus aureus. Background technique [0002] Staphylococcus aureus is a common bacterial group among Gram-positive bacteria that infects human beings, which brings a huge burden to patients and society. The traditional detection method is bacterial culture or combined PCR sequencing, but bacterial culture takes 5-7 days, and PCR often cannot distinguish Staphylococcus aureus from other staphylococci due to the lack of specific primers, so joint generation sequencing is required It can only be identified, the ...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6844C12Q1/14C12N15/11
CPCC12Q1/6844C12Q2531/119C12Q2563/107C12Q2525/161
Inventor 孙泽玮陈文静郑良荣
Owner ZHEJIANG UNIV
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