Kit used for staphylococcus aureus detection
A Staphylococcus aureus and aureus technology, applied in the field of kits for the detection of Staphylococcus aureus, can solve the problems of high cost, delay in disease treatment, inability to distinguish Staphylococcus aureus from other staphylococci, and achieve high specificity , The effect of low equipment requirements
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Embodiment 1
[0016] Embodiment 1: Staphylococcus rpoB gene sequence alignment
[0017] Such as figure 1 As shown, in the rpoB gene sequence of Staphylococcus aureus, the 5' end of the guide RNA sequence (selected part) of the present invention is the PAM structure of TTTN. The guide RNA sequence does not have a completely consistent sequence among Staphylococcus epidermidis, Staphylococcus hominis, Staphylococcus waerii, Staphylococcus capitus, and Staphylococcus hemolyticus, and all have several base differences. Moreover, there is no PAM structure of TTTN at the 5' end of the homologous sequence in Staphylococcus epidermidis, Staphylococcus hominis, Staphylococcus worthii, Staphylococcus capitum, and Staphylococcus hemolyticus. Therefore, the Cas12a protein cannot be targeted by using this guide RNA. To Staphylococcus epidermidis, Staphylococcus hominis, Staphylococcus worthii, Staphylococcus capitis, Staphylococcus hemolyticus, therefore, only Staphylococcus aureus can show positive re...
Embodiment 2
[0018] Embodiment 2: The guide RNA specificity determination of the present invention, the steps are as follows:
[0019] (1) Prepare standard strains of Staphylococcus aureus, Staphylococcus epidermidis, Staphylococcus hominis, Staphylococcus worbachii, Staphylococcus capitis, Staphylococcus hemolyticus;
[0020] (2) Take 1ml of the sample to be tested, heat it at 98 degrees Celsius for 5min, and draw 1μl as the test sample;
[0021] (3) Prepare the reaction system, the reaction system is 25 μl, including 1 μl detection sample, 14.75 μl hydrated TwistAmp basickit reaction drying ball (TwistDx company), 0.9 μl 10mM RPA-F (sequence is SEQ No.2) and RPA-R ( Sequence is SEQNo.3), 0.375 μl Ribonuclease Inhibitor (Takara company), 3.5 μl buffer2.1 (NEB company), 1000nM guide RNA (sequence is SEQ No.1), 250nM Cas12a (NEB company), 200nM single-stranded DNA probe Needle (Shanghai Sangong), add water to make up to 25μl;
[0022] (4) React at a constant temperature of 37 degrees Cels...
Embodiment 3
[0025] Embodiment 3: the detection method based on guide RNA described in the present invention and traditional PCR method specificity and experimental time-consuming comparison
[0026] 1. based on the detection method of guide RNA described in the present invention, the steps are as follows:
[0027] (1) Prepare standard strains of Staphylococcus aureus, Staphylococcus epidermidis, Staphylococcus hominis, Staphylococcus worbachii, Staphylococcus capitis, Staphylococcus hemolyticus;
[0028] (2) Take 1ml of the sample to be tested, heat it at 98 degrees Celsius for 5min, and draw 1μl as the test sample;
[0029] (3) Prepare the reaction system, the reaction system is 25 μl, including 1 μl detection sample, 14.75 μl hydrated TwistAmp basickit reaction drying ball (TwistDx company), 0.9 μl 10mM RPA-F (sequence is SEQ No.2) and RPA-R ( Sequence is SEQNo.3), 0.375 μl Ribonuclease Inhibitor (Takara company), 3.5 μl buffer2.1 (NEB company), 1000nM guide RNA (sequence is SEQ No.1),...
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