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Application of a multi-target gene parallel detection combination probe and its kit

A detection kit and multi-target technology, which is applied in the application field of multi-target gene parallel detection combined probes and kits, can solve the problems of multiple types of primers, high concentrations, detection cross-interference, etc., and achieves strong exponential amplification ability , Improve the accuracy and specificity, the effect of structural stability

Active Publication Date: 2021-07-13
XI AN JIAOTONG UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0004] However, in the existing detection methods, due to the many types and high concentrations of primers involved in the multiplex amplification system, the parallel detection of multiple targets has serious cross-interference, and the resolution of target sequence recognition is insufficient.
Therefore, it remains a challenge to develop methods that can accurately identify single-nucleotide variants in multigene parallel testing

Method used

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  • Application of a multi-target gene parallel detection combination probe and its kit
  • Application of a multi-target gene parallel detection combination probe and its kit
  • Application of a multi-target gene parallel detection combination probe and its kit

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0061] Example 1 Multi-target gene parallel detection of the above-described combined probe B type hepatitis B virus

[0062] Combine Figure 7 The detection result shown, the passages 1, 2, 3, 4 correspond to the fluorescent signals of TEX, HEX, FAM, and CY5, respectively. When there is B-type hepatitis B in the system, FIP-HEX, BIP-TEX respectively acts with the target S gene and the C gene, and the passages 1, 2 produce a strong fluorescent signal. LAMP amplification product is completely complementary to the viscous end of the T-specific hybrid structure probe (LF-FAM / LF Block BHQ2), can produce a strong TOE-HOLD replacement, channel 3 can collect stronger FAM fluorescence . At the same time, the probe of the combined labeled FAM fluorescence can be used as an amplification of the Type B-type hepatitis S gene as a circular orientation. Since the B-type hepatitis B and the C-type hepatitis B virus genome have a base difference, the above LAMP amplification product acts as a C-...

Embodiment 2

[0063] Example 2 The above-described combined probe can be used in parallel detection of multi-target genes of C-type hepatitis B virus

[0064] Combine Figure 8 The detection result shown, the passages 1, 2, 3, 4 correspond to the fluorescent signals of TEX, HEX, FAM, and CY5, respectively. When there is C-type hepatitis B in the system, FIP-HEX, BIP-TEX respectively acts with the target S gene and the C gene, and the channels 1, 2 produce a strong fluorescent signal. LAMP amplification product is completely complementary to the viscous end of the C-type-specific hybrid structure probe (LB-CY5 / LB Block BHQ2), which can produce strong TOE-HOLD replacement, channel 4 can collect stronger FAM fluorescence . At the same time, the probe of the combined marker Cy5 fluorescence can be an amplified as a circular orientation accelerated C-type hepatitis B S gene. Since the B-type hepatitis B and C-type hepatitis B virus genome have a base difference, the above-mentioned LAMP amplificati...

Embodiment 3

[0065] Example 3 The above-mentioned combination probe can be used in parallel detection and typing of multidimensional genes of hepatitis B virus in clinical serum samples

[0066] Serum samples of 24 cases of hepatitis B were collected, and the viral genome in serum was extracted using a commercial kit. The multi-channel information is effectively integrated, the data is verified, and the target quantitative and high quality data of the classification can be accurately acquired. Such as Figure 9 As shown: No. 2 and No. 14 samples are B-type hepatitis B virus, No. 1 and No. 11 samples are other subtype hepatitis B viruses, and the rest are C-type hepatitis B virus, the above results are consistent with the sequencing results.

[0067] In summary, the present invention constructs a multi-LAMP amplification system, and the signal probe combination includes: a pair of stem ring structure probes (FIP-HEX, BIP-TEX), a pair of hybrid structure probes (LF-FAM / LF Block BHQ2, LB-CY5 / L...

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Abstract

The invention discloses a combination probe for multi-target gene parallel detection and the application of the kit thereof, comprising a pair of stem-loop structure probes and a pair of double-strand hybridization structure probes; the stem-loop structure probes are 5 The complementary sequence at the 5' end of the 'oligonucleotide chain is connected to it by a C18 spacer to form a stem-loop structure probe with C18 as the ring and a single-stranded protruding 3' oligonucleotide; the double-stranded hybridization structure probe , including a long chain labeled with a fluorescent group at the 5' end and a short chain labeled with a quencher group at the 3' end. The full length of the short chain is partially complementary to the long chain to form a double-stranded complex. The multicolor fluorescence-labeled structural nucleic acid probe combination designed by the present invention can be used for the simultaneous detection of multiple target genes, with a sensitivity as high as 1 copy / microliter; combined with dual regulation of strand displacement thermodynamics and polymerase kinetics, the recognition resolution can reach At the single nucleotide level, the accurate identification of single nucleotide variations in multigene parallel detection is realized.

Description

Technical field [0001] The present invention belongs to the field of gene detection, and it is related to a multimodal gene parallel detection combination probe and a kit thereof. Background technique [0002] Multi-gene combination detection can acquire multiple gene sequences, sites, and abundance information at the same time, comprehensive acquisition characteristics, effectively improve the reliability and accuracy of analytical detection, and is of great significance in the fields of biological research and disease diagnosis. Multiple PCR amplification techniques can be widely used in the same reaction system to amplify multi-target sequences, which has been widely used in polynomic joint detection. However, multiple PCR technologies need to rely on accurate temperature-controlled thermal cycling devices, which is difficult to meet the analysis needs of simple, convenient molecular diagnosis technology. [0003] Nucleic acid isothermal amplification techniques can quickly ac...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/6858C12N15/11
CPCC12Q1/6858C12Q2531/119C12Q2537/1373C12Q2563/107
Inventor 赵永席赵越房晓星陈锋
Owner XI AN JIAOTONG UNIV
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