Multiple PCR primer system and detection method for detecting lung cancer circulating free DNA (cfDNA) methylation as well as application

A technology of methylation and plasma, applied in the field of multiple PCR primer system, can solve the problems of low sensitivity and false negative of radiation, sputum exfoliated cell inspection

Active Publication Date: 2020-09-18
WUHAN IGENEBOOK BIOTECH CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

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Problems solved by technology

However, these methods for early diagnosis of lung cancer also have obvious deficiencies: low-dose spiral CT (LDCT) has the risk of radiation; bronchial endoscopy is often invasive, and there are many false negatives; The problem of low precision and many false negatives
However, DNA methylation markers of lung cancer have not been widely used in the field of general health screening and companion diagnosis

Method used

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  • Multiple PCR primer system and detection method for detecting lung cancer circulating free DNA (cfDNA) methylation as well as application
  • Multiple PCR primer system and detection method for detecting lung cancer circulating free DNA (cfDNA) methylation as well as application
  • Multiple PCR primer system and detection method for detecting lung cancer circulating free DNA (cfDNA) methylation as well as application

Examples

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Embodiment 1

[0196] Example 1, multiplex PCR primer system for detection of plasma free DNA methylation in lung cancer

[0197] In this embodiment, the primers are designed for the target region of 120 bases upstream and downstream of the lung cancer-specific methylation site. Since the longest length of plasma free DNA generally does not exceed about 200 bp, it is necessary to limit the amplification length of the primers to within 120 bases.

[0198] Table 1 shows the overview of multiplex PCR primers designed in this example for the detection of methylation of plasma cell-free DNA in lung cancer.

[0199] Table 1 Overview of multiplex PCR primer design for detection of plasma cell-free DNA methylation in lung cancer

[0200]

Embodiment 2

[0201] Example 2. Using the multiplex PCR primer system designed by the present invention to detect the methylation level of plasma free DNA in lung cancer

[0202] S1. Extraction of cell-free DNA from lung cancer plasma

[0203] Use the QIAamp Circulating Nucleic Acid Kit (Qiagen 55114) to extract lung cancer plasma cell-free DNA according to the kit instructions.

[0204] S2. Plasma free DNA bisulfite conversion and purification

[0205] Use the EZ DNA Methylation-Gold Kit (zymo Research D5005s) to convert 10 ng of plasma free DNA according to the kit instructions. The specific implementation steps are as follows:

[0206] 1) Prepare the CT Conversion Reagent conversion solution according to the instructions, and prepare it for immediate use;

[0207] 2) Take 20 μL of unconverted DNA sample (sample volume is less than 20 μL, add water to make up), add 130 μL of CTConversion Reagent transformation solution, vortex to mix well, and briefly centrifuge to collect the reaction ...

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Abstract

The invention discloses a multiple PCR primer system and detection method for detecting lung cancer circulating free DNA (cfDNA) methylation as well as application. The multiple PCR system for detecting lung cancer cfDNA methylation as well as application includes a first round of multiple PCR primer sets and/or a second round of multiple PCR primers, wherein the first round of multiple PCR primersets contains 55 pairs of PCR primers with sequences shown in SEQ ID NO.1-SEQ ID NO.110 in a sequence listing, the sequences of the second round of multiple PCR primers are shown in SEQ ID NO.111-SEQID NO.112. The method for detecting lung cancer cfDNA methylation simultaneously detect 55 methylation sites related to lung cancer at one time, multiple PCR primers have little mutual interference,strong specificity, and high amplification efficiency, besides, the method can reduce the sample loss, reduce detection cost, improve detection efficiency, significantly increase the detection rate ofearly lung cancer by a high-throughput sequencing technology, and is suitable for popularization and application.

Description

technical field [0001] The invention relates to the field of molecular biology detection, in particular to a multiplex PCR primer system, detection method and application for detection of plasma free DNA methylation in lung cancer. Background technique [0002] Lung cancer has always been the cancer with the highest incidence and mortality in the world. The early diagnosis of lung cancer is mainly based on the high-risk factors in the medical history, combined with imaging, endoscopy and molecular biology to carry out early screening, so as to achieve the purpose of early detection and early treatment. However, these detection methods for early diagnosis of lung cancer also have obvious deficiencies: low-dose spiral CT (LDCT) has the risk of radiation; bronchial endoscopy is often invasive, and there are many false negatives; The problem of low precision and many false negatives. There are also methods such as puncture tissue biopsy, which are traumatic and can only be use...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6886C12Q1/686C12Q1/6869C12N15/11
CPCC12Q1/6886C12Q1/686C12Q1/6869C12Q2600/154C12Q2600/16C12Q2537/143C12Q2535/122Y02A50/30
Inventor 易吉解青青李泽卿
Owner WUHAN IGENEBOOK BIOTECH CO LTD
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