M2 type pyruvate kinase small molecule activator and application thereof

A technology of kinases and medicinal salts, applied in the field of medicinal chemistry, can solve the problems of limited types and quantities, and achieve the effect of inhibiting the activity of cancer cells

Inactive Publication Date: 2021-01-01
LANZHOU UNIVERSITY
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, the types and quantities of PKM2 agonists that have been reported are still quite limited, and it is still necessary to design and discover activators that specifically target PKM2 with a new backbone.

Method used

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  • M2 type pyruvate kinase small molecule activator and application thereof
  • M2 type pyruvate kinase small molecule activator and application thereof
  • M2 type pyruvate kinase small molecule activator and application thereof

Examples

Experimental program
Comparison scheme
Effect test

Embodiment Construction

[0034] 1. Virtual screening method for small molecule compounds Ⅰ and Ⅱ

[0035] (1) Protein preparation

[0036] The three-dimensional structure of PKM2 (PDBcode: 3ME3) was searched and obtained in the protein database (https: / / www.rcsb.org / ), since PKM2 is in the tetrameric form (attached figure 1 As shown), its structure is symmetrical along the C-C' interface, and the binding site of the small molecule activator is on the A-A' interface, so we choose the dimer of A chain and B chain as the research object. Use the Protein preparation wizard module in the maestro included in the Schrodinger9.4.5 software package to prepare, first hydrogenate the protein, and then perform energy optimization and minimization on the protein under the OPLS_2005 force field.

[0037] (2) Ligand preparation

[0038]The small molecules used for docking were obtained from the Chembridge database and the SPECS database, respectively. Among them, the Chembridge database contains about 400,000 sma...

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PUM

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Abstract

The invention provides a small molecular activator taking human M2 type pyruvate kinase (M2 type pyruvate kinase, PKM2) as a target spot and application of the small molecular activator, and belongs to the technical field of pharmacy. According to the small molecular activator, the PKM2 is taken as the target spot, and the small molecule activator is screened by combining virtual screening based on butt joint and in-vitro biological activity evaluation. In-vitro activity test results show that two screened compounds have good PKM2 activation activity and good cancer cell inhibition activity, and discovered small molecules can provide a basis for research and development of new drugs for treating PKM2 related diseases, such as cervical cancer, breast cancer, ovarian cancer, prostate cancer,liver cancer, lung cancer, pancreatic cancer, colorectal cancer, leukemia, melanoma and multiple myeloma. A lead compound of the small molecular activator can be further optimized in structure, and arelatively good application prospect is achieved.

Description

technical field [0001] The invention belongs to the technical field of medicinal chemistry, and specifically relates to the application of a lead compound for activating human PKM2 kinase activity by targeting M2 type pyruvate kinase (PKM2) protein in the preparation of PKM2-related disease drugs. Background technique [0002] In cells, the process of metabolizing glucose into lactic acid is called glycolysis, and the reaction process can be divided into two stages; the first stage is called glycolytic pathway, which is the process of decomposing glucose into pyruvate ; The second stage is the process of converting pyruvate into lactic acid. The last step in the glycolytic pathway is catalyzed by pyruvate kinase (Pyruvate Kinase, PK), which transfers phosphate from phosphoenolpyruvic acid (PEP) to adenosine diphosphate , ADP), thus producing pyruvate and ATP. [0003] Tumor cells take up and metabolize nutrients differently from normal cells, which provides a possible stra...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): A61K31/502A61K31/426A61P35/00A61P35/02
CPCA61K31/502A61K31/426A61P35/00A61P35/02A61K2300/00
Inventor 刘焕香葛慧珍刘瑞娟袁苗苗郭婧筠彭立增姚小军
Owner LANZHOU UNIVERSITY
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