M2 type pyruvate kinase small molecule activator and application thereof
A technology of kinases and medicinal salts, applied in the field of medicinal chemistry, can solve the problems of limited types and quantities, and achieve the effect of inhibiting the activity of cancer cells
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[0034] 1. Virtual screening method for small molecule compounds Ⅰ and Ⅱ
[0035] (1) Protein preparation
[0036] The three-dimensional structure of PKM2 (PDBcode: 3ME3) was searched and obtained in the protein database (https: / / www.rcsb.org / ), since PKM2 is in the tetrameric form (attached figure 1 As shown), its structure is symmetrical along the C-C' interface, and the binding site of the small molecule activator is on the A-A' interface, so we choose the dimer of A chain and B chain as the research object. Use the Protein preparation wizard module in the maestro included in the Schrodinger9.4.5 software package to prepare, first hydrogenate the protein, and then perform energy optimization and minimization on the protein under the OPLS_2005 force field.
[0037] (2) Ligand preparation
[0038]The small molecules used for docking were obtained from the Chembridge database and the SPECS database, respectively. Among them, the Chembridge database contains about 400,000 sma...
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