Primer group for detecting and distinguishing Echinococcus granulosus and Echinococcus multilocularis through loop-mediated isothermal amplification
A ring-mediated isothermal and Echinococcus granulosus technology, applied in the direction of recombinant DNA technology, microbial measurement/inspection, biochemical equipment and methods, etc., can solve problems such as unsatisfactory and incompetent for grass-roots and on-site detection needs, To achieve the effect of strong specificity and high detection sensitivity
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Embodiment 1
[0035] Example 1: Primer Design
[0036]Primers were designed according to the repeat region sequence (RRS) of Echinococcus granulosus (Gene bank: KR347168.1) and the microsatellite sequence of Echinococcus multilocularis EmTriple83 (NCBI: AF492849.1), providing the isothermal There are 2 sets of 8 primers required for the amplification reaction, including outer primers F3-1, B3-1, F3-2, B3-2, inner primers FIP-1, BIP-1, FIP-2, BIP-2 .
[0037] The first outer primer:
[0038] Outer primer F3-1: 5'-gcatgtgtgtgaatgcaagc-3',
[0039] Outer primer B3-1: 5'-gggcaatcgcagtgaagt-3';
[0040] First pair of internal primers:
[0041] Internal primer FIP-1: 5'-aactacctccacagcacggcagcagatgcctacccatcc-3',
[0042] Internal primer BIP-1: 5'-taagacatcggtgcgagcactctgccttcgttaggtggagat-3';
[0043] The second outer primer:
[0044] Outer primer F3-2: 5'-aaccaccaacctttcggtta-3',
[0045] Outer primer B3-2: 5'-ggaatgggaaggtgatggc-3';
[0046] Second pair of internal primers:
[0047] ...
Embodiment 2
[0049] Example 2: Specific detection of the first outer primer and the first pair of inner primers
[0050] Using the genomic DNA of Echinococcus multilocularis, Echinococcus granulosus, murine tapeworm, Sparganum Guangzhou isolate, Sparganum Henan isolate, Schistosoma japonicum, and Angiostrongylus cantonensis as templates, add each template into the reaction tube and add the primer set F3-1, B3-1, FIP-1, BIP-1 (outer primer final concentration is 5pmol, inner primer final concentration is 40pmol), 8U Bst 2.0 DNA polymerase, 1.5mM dNTP, 7.5mM MgSO 4 and ddH 2 O, in addition, 1 μl of SYTO13 fluorescent dye with a concentration of 25 μM was added, and the reaction was carried out on a fluorescent quantitative PCR instrument of Bio-Rad. The specific reaction procedure was: react at 65°C for 1.5h and collect fluorescence data, and react at 95°C for 5min.
[0051] The result is as figure 1 As shown, the primer set can detect the genomic DNA of Echinococcus granulosus, but cannot...
Embodiment 3
[0052] Embodiment 3: the specificity detection of the second outer primer and the second pair of inner primers
[0053] Using the genomic DNA of Echinococcus multilocularis, Echinococcus granulosus, murine tapeworm, Sparganum Guangzhou isolate, Sparganum Henan isolate, Schistosoma japonicum, and Angiostrongylus cantonensis as templates, add each template into the reaction tube and add the primer set F3-2, B3-2, FIP-2, BIP-2 (outer primer final concentration is 5pmol, inner primer final concentration is 40pmol), 8U Bst 2.0 DNA polymerase, 1.5mM dNTP, 7.5mM MgSO 4 and ddH 2 O, in addition, 1 μl of SYTO13 fluorescent dye with a concentration of 25 μM was added, and the reaction was carried out on a fluorescent quantitative PCR instrument of Bio-Rad. The specific reaction procedure was: react at 65°C for 1.5h and collect fluorescence data, and react at 95°C for 5min.
[0054] The result is as figure 2 As shown, the primer set can detect the genomic DNA of Echinococcus granulosu...
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