Targeting medicament curative effect related gene mRNA expressive level detection Luminex and detection method
A technology of expression level and detection solution, which is applied in the field of molecular biology, can solve the problems that the accuracy is easily affected by pathological conditions, the RNA degradation is greatly affected, and the operation is cumbersome, so as to achieve reliable detection results, good specificity, and improve the detection signal Effect
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Embodiment 1
[0058] Example 1 A liquid chip kit for detecting the mRNA expression level of genes related to the therapeutic effect of targeted drugs of receptor tyrosine kinase inhibitors mainly includes:
[0059] 1. Microspheres coupled with support probes (SP)
[0060] The support probe is composed of three parts, the 5'end is the amino end that binds to the microsphere, the 3'end is the specific sequence P1 that binds to the support extension probe, the length is 16 nt, the middle is the spacer, the spacer is It is used to separate the support probe from the surface of the microsphere. There is also a spacer sequence inside the support extension probe and the amplification extension probe. By setting an appropriate length of space between the probe sequence and the amino group and inside the probe Arm sequence can reduce steric hindrance, improve the efficiency of hybridization reaction and the specificity of hybridization reaction. The spacer arm of the support probe of the present inventi...
Embodiment 2
[0088] Example 2 Using receptor tyrosine kinase inhibitor targeted drug-related gene mRNA expression level to detect liquid chip detection of clinical samples
[0089] The formulations of the various solutions are as follows:
[0090]
[0091] 1. Lysis the sample to release total RNA
[0092] 1. Scrape the FFPE tumor tissue section from the glass slide, put it into a 1.5ml centrifuge tube, add 300ul homogenization buffer and 3ul proteinase K (50ug / ul), mix well and digest at 65°C for 2h.
[0093] 2. After digesting the sample for 2 hours, centrifuge at 13,000 rpm for 5 minutes at room temperature, and transfer the clear solution to a new 1.5ml centrifuge tube for later use. (If the solution is still not clear, repeat this step 1 or 2 times.)
[0094] 2. The target mRNA is fixed on the microsphere by specific binding with the probe
[0095] 1. Take out the probe working solution and melt it at room temperature, then denature it at 95°C for 5 minutes, and immediately place it on ice.
[009...
Embodiment 3
[0124] Example 3 Detection of mRNA expression levels of genes related to the efficacy of receptor tyrosine kinase inhibitor targeted drugs by liquid chip with different spacer arms
[0125] 1. Design of liquid phase chip preparation (selection of spacer arms) Take the supporting probes of B2M, EGFR, IGF-1R detection liquid chip as examples, and choose different spacer arms respectively. The specific design is shown in Table 8. The synthesis of probes SP, SE and AE, SP sequence coated microspheres, and detection methods are as described in Example 1 and Example 2.
[0126] Table 8 Spacer arm and its length
[0127] Spacer type
length
poly(dT)
8
1
poly(dA)
8
2
(CH2)n
15
3
poly(TTG)
3
4
[0128] 2. Sample detection
[0129] Using the liquid phase chip prepared by the above design, samples 11-15 were detected according to the detection process and method described in Example 2. The detection results are as follows (the data in the table are the detection ...
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