Duck source coronavirus ORF1a protein gene and cloning method and application thereof
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Technology of a coronavirus, cloning method, applied in the field of bioengineering
Inactive Publication Date: 2011-02-02
HENAN INST OF SCI & TECH
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The ORF1a protein gene contains a functional domain encoding parvovirus-like 3C protease, which is involved in viral replication, indi
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Embodiment 1
[0038] Embodiment 1 A kind of cloning method of the ORF1a gene of duck origin coronavirus ZZ2004
[0039] (1) PCR primer design
[0040] The duck-derived coronavirus ZZ2004 strain was selected, and 12 pairs of primers were designed using the homologous sequence of the duck-derived coronavirus ZZ2004 strain as a template, as shown in Table 1
[0041] Table 1 ORF1a protein gene amplification primers
[0042]
[0043] (2) The enrichment method of ZZ2004 strain
[0044] Dilute the allantoic fluid infected by the ZZ2004 strain 1:10 with sterilized PBS, inoculate 0.2ml into the chorioallantoic cavity of 9-day-old SPF chicken embryos, incubate at 37°C for 36-48h, place at 4°C for 12h, and harvest the chicken Embryo allantoic fluid.
[0045] Take 50ml of SPF chick embryo allantoic fluid infected by ZZ2004 strain into three sterilized centrifuge tubes, centrifuge at 5000rpm for 20min; discard the precipitate respectively, take the supernatant in another sterilized centrifuge tube...
Embodiment 2
[0091] Example 2 Alignment of amino acid sequence homology deduced from the ORF1a gene of IBV ZZ2004 strain (see Figure 4 )
[0092]Compared with IBV reference strain, the homology rate of 1a gene of IBV ZZ2004 strain was 85.6~93.1%. Compared with the classic strain Beaudette strain, its variation segments are mainly concentrated in 698-703nt, 1079-1100nt, 1220-1233nt, 1730-2254nt, 2900-2930nt, 2944-2948nt, 3231-3542nt, 3840-3865nt, 3970-3991nt , 4988~4996nt, 5370~5412nt, 5503~5520nt, 7325~7400nt and other regions, and there are still many scattered point mutations in other regions; compared with the SAIBK strain with the highest homology rate, its mutations are mainly concentrated in 2888~2889nt, 2911~2942nt, 3280~3300nt, 7918~7919nt, 7930~7980nt, 9907~9927nt, 9941~9943nt and other regions, and there are some scattered point mutations in other regions.
[0093] genetic tree (see Figure 5 ) analysis results showed that the isolate ZZ2004 ORF1a protein belonged to the same...
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Abstract
The invention discloses an ORF1a protein gene of duck source coronavirus ZZ2004 and a cloning method and application thereof. An ORF1a protein gene sequence 11859bp codes ORF1a protein of 3952 amino acid residues; a virus sequence having high homology with the ORF1a protein gene sequence is found by random PCR, and the virus sequence is used as a template to design 12 pairs of specific primers to amplify corresponding segments, and then the ORF1a protein gene segments are connected with a pMD18-T carrier respectively. As IBV ORF1a protein has the activity of RNA polymerase and the spectrum of infection of the virus is very different from other strains, the ORF1a protein gene is important for studying IBV, then revealing the epidemic and variation rules of the IBV in a molecular level, developing IBV nucleic acid vaccine, live carrier vaccine and medicines for preventing and curing infectious bronchitis of chicken and preventing and controlling the occurrence and prevalence of IB.
Description
technical field [0001] The invention relates to the field of bioengineering, in particular to an ORF1a protein gene of duck-derived coronavirus ZZ2004, a cloning method and application thereof. Background technique [0002] In 1937, coronaviruses (Coronaviruses) were first isolated from chickens. In 1965, the first human coronavirus was isolated. It is named "coronavirus" because it can be observed under an electron microscope that there are obvious rod-shaped particle protrusions on its outer membrane, making it look like the crown of a medieval European emperor. According to the serological characteristics of the virus and the differences in nucleotide sequences, the Coronaviridae family is currently divided into two genera, coronavirus and torovirus. The representative strain of Coronaviridae is Avian infectious bronchitis virus (IBV). The virus is an enveloped, moderately pleomorphic spherical or oval virion with rod-shaped protrusions on the surface. [0003] Avian ...
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