Indole benzothiazole derivative and pharmaceutical use thereof
A kind of technology of indole benzothiazole and derivatives, applied in the field of indole benzothiazole derivatives and their pharmaceutical uses
- Summary
- Abstract
- Description
- Claims
- Application Information
AI Technical Summary
Problems solved by technology
Method used
Image
Examples
Embodiment 1
[0023] Example 1 5-HT 1A Receptor 3D model construction
[0024] The protein sequence is from the Swiss-Prot database (http: / / www.expasy.ch / sprot / ), human epinephrine β 2 receptors and 5-HT 1A The sequence numbers of the receptors are P07550 and P08908, respectively. Using the ClustalW algorithm in the FASTA program, the 5-HT 1A receptors and adrenergic beta 2 Multiple sequence alignments were performed on the receptor sequences, and then the matched sequences were fine-tuned according to the positions of conserved residues in the GPCR superfamily. The results are shown in Table 1. 5-HT 1A receptors and adrenergic beta 2 The homology of receptor transmembrane helix is 41.9%.
[0025] 1 is 5-HT 1A receptors and adrenergic beta 2 Homology and similarity of the seven transmembrane domains of the receptor.
[0026] Table 1
[0027] homology similarity TM-1 25.0% 53.1% TM-2 40.4% 76.7% TM-3 52.9% 79.4% TM-4 24.0% 52.0% ...
Embodiment 2
[0029] Example 2 5-HT 1A Molecular Dynamics Simulation of Receptor Added Membrane
[0030] Molecular dynamics simulations were performed using GROMACS 3.3.1 and GROMOS96 force fields. 5-HT after initial energy optimization 1A The receptor model is inserted vertically into the POPC (palmitoyl-oleoyl-phosphatidylcholine) phospholipid bilayer. The protein and POPC structural models are dissolved in the single point charge (SPC) water molecule model; the Berendsen constant temperature method is used to maintain the system temperature at 300K; the system pressure is maintained at one atmospheric pressure; the LINCS algorithm is used to limit the bond length of all chemical bonds containing hydrogen atoms; The electrostatic interaction is calculated by the particle-mesh Ewald (PME) method, with 9 is the cut off value (cut off); the cut off value of Lennard-Jones interaction is selected as 14 . For each simulation system, a cubic box is used as the simulation unit, the prot...
Embodiment 3
[0032] Example 3 5-HT 1A Active site detection of receptors and construction of dynamic pharmacophore models.
[0033] The representative conformations of the first 10 clusters in the kinetic simulation results were taken as the receptor model, and the conserved Asp 3.32 Around 10 The in-scope regions are defined as boxes for site probing by the GRID program. Since the GPCR receptor pocket is negatively charged, four typical probes were selected: N+ (positive charge probe), O (hydrogen bond acceptor probe), N1 (hydrogen bond donor probe) and DRY (hydrophobic group probe). needles) to probe the corresponding electronegativity, hydrogen bond donor, hydrogen bond acceptor, and hydrophobic chemical environment in the protein, respectively. According to the probe points obtained by superimposing 10 conformations of Cα, an appropriate cluster was selected according to the binding energy of the GRID probe point and the nature of the interaction with the receptor amino acid res...
PUM
Abstract
Description
Claims
Application Information
- R&D Engineer
- R&D Manager
- IP Professional
- Industry Leading Data Capabilities
- Powerful AI technology
- Patent DNA Extraction
Browse by: Latest US Patents, China's latest patents, Technical Efficacy Thesaurus, Application Domain, Technology Topic, Popular Technical Reports.
© 2024 PatSnap. All rights reserved.Legal|Privacy policy|Modern Slavery Act Transparency Statement|Sitemap|About US| Contact US: help@patsnap.com