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Pathogenic microorganism nucleic acid amplification-free detection and typing method

A technology for pathogenic microorganisms and typing methods, applied in the field of non-amplification direct detection and typing methods and kits for pathogenic microorganisms nucleic acid, can solve the problems of difficult clinical sample detection, increased medical costs and patient burden, false negative results, etc. , to achieve real-time detection and synchronous genotyping, improve detection accuracy and low cost

Inactive Publication Date: 2013-03-20
SOUTHWEST HOSPITAL OF CHONGQING
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AI Technical Summary

Problems solved by technology

These PCR-based amplification techniques for HBV detection and typing still have the following deficiencies: (1) the amplification conditions are extremely strict, and false positives or false negatives are easily produced
(2) Synchronous amplification of multiple genotypes often leads to competitive inhibition of high-concentration templates against low-concentration templates, resulting in false negative results for low-concentration samples
(3) Barriers to the core intellectual property rights of PCR-related technologies lead to high prices for related reagents and equipment, increasing medical costs and patient burdens
However, in experiments, we found that traditional fluorescent dyes are easily bleached, making it difficult to detect clinical samples
[0006] However, the sequence homology between the A-H subtypes of HBV is very high, and the use of nucleic acid hybridization technology to type them requires the preparation of highly specific probes

Method used

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  • Pathogenic microorganism nucleic acid amplification-free detection and typing method
  • Pathogenic microorganism nucleic acid amplification-free detection and typing method
  • Pathogenic microorganism nucleic acid amplification-free detection and typing method

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Experimental program
Comparison scheme
Effect test

Embodiment Construction

[0038] (1). Preparation of HBV identification probe

[0039] HBV probes mainly use oligo6.0 software combined with primer Premier6.0 software to design DNA probes, and for PNA probes, use the above software to find multiple pairs of candidate sequence regions (expand the candidate region to more than 1 times) , and then use oligonucleotide software to verify multiple candidate sequences (1:10 ratio), and then submit the candidate sequences to PNA Synthesis Company (Bio-Synthesis) for sequence verification, and finally the length of the synthesized PNA probe sequence is between 14-20bp between. The verification and synthesis of PNA probes were completed by Bio-Synthesis Company. The design principle of the bridging DNA probe is to achieve a high Tm value under the premise of ensuring a short sequence, and it cannot have a loop structure.

[0040] probe name

probe sequence

PNA species-specific probe 1

5'-NH 2 -(CH 2 ) 6 -AGGCACAGCTTGGAGGC-3'

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Abstract

The present invention discloses a pathogenic microorganism nucleic acid amplification-free detection and typing method, and related kits thereof, wherein a plurality of probes and a fluorescence quantum dot layer-by-layer assembly technology are combined to achieve pathogenic microorganism nucleic acid amplification-free detection and typing. According to the method, low concentration nucleic acid can be directly detected without amplification; with the plurality of the probes, the easily-appearing false positive problem during a signal amplification process is overcome so as to improve detection accuracy; and with the technology, real time pathogenic microorganism copy number detection and synchronization genotyping can be achieved, speed is fast, and cost is low.

Description

technical field [0001] The invention belongs to the field of medical biology, and in particular relates to a direct detection and typing method and kit of pathogenic microorganism nucleic acid without amplification. Background technique [0002] Infectious diseases are one of the most important diseases that seriously endanger human health. According to the statistics of the National Center for Disease Control and Prevention (CDC): In 2011, there were 6.32 million cases of legal infectious diseases in my country and 15,000 deaths. Among them, the incidence of viral hepatitis, tuberculosis and syphilis ranks the top three, accounting for 85.41% of the total incidence of Class B infectious diseases. And the incidence of blood-borne infectious diseases such as hepatitis B and hepatitis C is increasing year by year. The above data show that viral hepatitis B still occupies the first place in the incidence of infectious diseases in my country, and its number of cases also accou...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/70C12Q1/68G01N21/64
CPCG01N21/6428C12Q1/70G01N2021/6439C12Q1/68C12Q1/689C12Q2563/107G01N2021/6493C12Q1/706C12Q2600/158
Inventor 罗阳张波蒋天伦府伟灵刘炜
Owner SOUTHWEST HOSPITAL OF CHONGQING