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Screening method and application of multiple-allele PCR (Polymerase Chain Reaction) amplified fragment

A technology for amplifying fragments and alleles, applied in the field of molecular biology, can solve the problems of limited information, low cost of industrialization, and few mutations, and achieve high efficiency.

Inactive Publication Date: 2014-08-06
JIANGSU ACADEMY OF AGRICULTURAL SCIENCES
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Screening for gene interval sequences is not only easy to find a large number of SNP sites, but also the multi-allelic PCR amplification fragments composed of a large number of SNP sites have a large amount of information, which in turn enables individual animal identity DNA identification and meat product traceability. And its research and development has become simpler, and the cost of technology industrialization is lower; compared with the intergenic sequence on the chromosome, the functional gene sequence is relatively conservative, with relatively few mutations, and the SNP screening efficiency is relatively low, and the amplified PCR fragment Most of them contain only one SNP site, and the amount of information is relatively limited

Method used

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  • Screening method and application of multiple-allele PCR (Polymerase Chain Reaction) amplified fragment
  • Screening method and application of multiple-allele PCR (Polymerase Chain Reaction) amplified fragment
  • Screening method and application of multiple-allele PCR (Polymerase Chain Reaction) amplified fragment

Examples

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Embodiment 1

[0017] Example 1 Multi-genotype PCR amplification fragment screening and individual identification of Duroc pig genomic DNA

[0018] 1.1 Primer design (taking pig chromosome 10 as an example)

[0019] 1.1.1 Nucleotide database in NCBI ( http: / / www.ncbi.nlm.nih.gov / nuccore ) in the search keyword Sus scrofa breed mixed chromosome10 (design primers on other chromosomes, change "10" to the corresponding chromosome number). After opening the page, click the hyperlinks Sus scrofa breed mixedchromosome10, Sscrofa10.2, Graphics in turn.

[0020] Click the configure button in the graphical interface to pop up the tab, and among all the options under the Tracks tab, only keep the "√" in front of the sequence and SNP. Click the configure button to confirm.

[0021] 1.1.2 Right-click on the darker blue (SNP dense) place in the SNP barcode, select "Zoom to sequence" from the pop-up menu, and adjust the scale to display in k through the "Zoom bar". Hold down the left mouse button on t...

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Abstract

The invention discloses a screening method and application of a multiple-allele PCR (Polymerase Chain Reaction) amplified fragment. The screening method comprises the steps of finding the published chromosome related data through NCBI (National Center for Biotechnology Information), and determining SNP (Single Nucleotide Polymorphism) aggregation suspected to exist; then, designing a primer for an SNP aggregation region suspected to exist, and carrying out PCR (Polymerase Chain Reaction); sequencing to detect whether a plurality of SNP sites really exist on a PCR amplified fragment; further carrying out correlation analysis on the SNP sites to determine whether the amplified fragment has multiple alleles so as to screen the multiple-allele PCR amplified fragment for animal individual identification, meat product tracing technology research and industrialization and the like.

Description

technical field [0001] The invention belongs to the field of molecular biology, and relates to a screening method and application of multi-allelic PCR amplification fragments. Background technique [0002] In recent years, food safety incidents have occurred frequently, and government management departments and consumers have paid unprecedented attention to food safety. Therefore, it is imminent to develop animal individual identification technology and meat product traceability technology, especially DNA identification technology. [0003] To this end, we have carried out a series of research on SNP barcode technology for animal individual identification and meat product traceability, and we deeply feel that if we want to truly realize the research and development and real industrialization of animal individual identification and other technologies, we need to make individual animal identification DNA identification and meat products Product DNA traceability technology and ...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/68
CPCC12Q1/6869C12Q1/6858C12Q2535/125C12Q2531/113
Inventor 邢光东丁潜胡肄农张浩明纪红军徐银学赵庆顺
Owner JIANGSU ACADEMY OF AGRICULTURAL SCIENCES
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