The invention relates to the Chinese medicine detection technology field and belongs to a Chinese medicine DNA detection kit, comprising an identification reaction system, a positive control reaction system and a negative control reaction system; both the identification reaction system and the positive control reaction system contain buffer solution, 12.5mM dNTP, one type of 0.1mM deer penis primer, fritillary primer and root of fangji primer, one type of Taq DNA polymerase, deer penis, fritillary and root of fangji DNA, sample DNA to be detected, and double-distilled water; the negative control reaction system contains buffer solution, 12.5mM dNTP, one type of 0.1mM deer penis primer, fritillary primer and root of fangji primer, one type of Taq DNA polymerase, bullwhack, false fritillary and fake root of fangji DNA, and double-distilled water. The Chinese medicine DNA identification method comprises steps such as designing deer penis, fritillary, root of fangji mitochondrial DNA three-pair specific oligonucleotide primer, artificial synthesis, fixing reaction procedures and result judgment, and the like; the Chinese medicine DNA identification kit can accurately identify the specificity of Chinese medicinal materials; and the identification method has the advantages of simplicity, rapidness, and reliable detection result, etc.