Looking for breakthrough ideas for innovation challenges? Try Patsnap Eureka!

A dna sequencing method comprising nucleotides and 3' end reversibly blocked nucleotides

A technology of DNA sequencing and nucleotides, applied in the direction of biochemical equipment and methods, measurement/inspection of microorganisms, etc., can solve problems such as ignorance

Active Publication Date: 2021-06-08
SOUTHEAST UNIV
View PDF4 Cites 0 Cited by
  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0006] When only one nucleotide synthesis occurs in this sequencing reaction, it can be a synthesis reaction of X or a synthesis reaction of Y*, but it is unknown which nucleotide synthesis reaction occurs, so Only one code (XY) can be used to represent the sequencing information of this nucleotide;

Method used

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
View more

Image

Smart Image Click on the blue labels to locate them in the text.
Viewing Examples
Smart Image
  • A dna sequencing method comprising nucleotides and 3' end reversibly blocked nucleotides
  • A dna sequencing method comprising nucleotides and 3' end reversibly blocked nucleotides
  • A dna sequencing method comprising nucleotides and 3' end reversibly blocked nucleotides

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0032] Example 1: A DNA sequencing method comprising nucleotides and 3' end reversibly blocked nucleotides is used to determine the artificially synthesized sequence comprising 3'-TAATCAG GTCTG-5' fragments.

[0033] 1. Template preparation: 5’-modified biotin artificially synthesized templates were immobilized with avidin-modified magnetic beads, then the magnetic beads were separated from the liquid, and the artificially synthesized templates immobilized by magnetic beads were used for hybridization with sequencing primers.

[0034] 2. Hybridization of sequencing primers: Incubate the designed sequencing primers with the template immobilized by magnetic beads at 75°C for 5 minutes, then cool naturally to room temperature, then separate the magnetic beads from the liquid, and use the template immobilized by magnetic beads for DNA sequencing.

[0035] 3. Place the template immobilized by magnetic beads in the reactor (block both ends of the reactor with a semi-permeable membran...

Embodiment 2

[0058] Example 2: Two-nucleotide real-time synthetic DNA decoding and sequencing of the Escherichia coli genome

[0059] 1. Preparation of the whole genome template: the Escherichia coli genome is broken into fragments with a size of 100-1000 bp bases by ultrasound, and these fragmented nucleic acid sequences are connected with a pair of universal linkers with known sequences (such as : The sequence of the linker 1 is: CTG CTG TAC CGT ACA GCC TTG GCC G; the sequence of the linker 2 is: CGC TTT CCTCTC TAT GGG CAG TCG GTGA T) for ligation and pre-amplification for 10 cycles; then gel The 200-800bp DNA fragment was cut by electrophoresis and purified. These 200-800bp DNA fragments were subjected to emulsion parallel PCR reaction with microbeads immobilized with complementary sequences of one of the linkers to amplify the fragmented Escherichia coli genome fragments and denature them to obtain Escherichia coli genome sequencing DNA templates Beads of double-stranded DNA templates...

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

PUM

No PUM Login to View More

Abstract

A DNA sequencing method that includes nucleotides and 3'-end reversibly blocked nucleotides. A single sequencing reaction is performed simultaneously by two different nucleotides, X and Y*, where X is an unblocked nucleotide at the 3'-end , Y* is a nucleotide that is reversibly blocked at the 3' end. According to the quantitative relationship between the number of detected molecules produced by two different nucleotides in the sequencing reaction and the number of synthesized nucleotides N, the sequencing information of a single sequencing reaction includes (N-1) specific base X and 1 or 0 Code XY. The whole sequencing includes performing at least two sets of sequencing reactions on the same template; finally, by comparing the two sets of sequencing information, the specific base sequence of the nucleic acid fragment to be tested is determined. Three sets of sequencing can also be performed, and the specific base sequence of the nucleic acid fragment to be tested can be determined by comparing the sequencing information obtained from the three sets of sequencing reactions, thereby further improving the accuracy of sequencing.

Description

technical field [0001] The invention belongs to the field of biotechnology, and is a method for realizing high-throughput determination of nucleic acid sequences, in particular to a DNA sequencing method comprising nucleotides and 3' end reversibly blocked nucleotides and its application. Background technique [0002] With the development and completion of the Human Genome Project and various model organism genome projects, human beings have entered the post-gene era, which has had a huge impact on contemporary biological research and medical research, and the related disciplines of molecular biology have been rapidly developed. develop. It will become possible to understand the differences of life, the law of disease occurrence and development, and the interaction between drugs and living organisms at the genetic level. Drastically reducing the cost of DNA sequencing will greatly promote research in life sciences and medicine, and even bring about revolutionary changes. A...

Claims

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

Application Information

Patent Timeline
no application Login to View More
Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/6869
CPCC12Q1/6869
Inventor 肖鹏峰陈默然王明琛龚音简柏樑
Owner SOUTHEAST UNIV
Who we serve
  • R&D Engineer
  • R&D Manager
  • IP Professional
Why Patsnap Eureka
  • Industry Leading Data Capabilities
  • Powerful AI technology
  • Patent DNA Extraction
Social media
Patsnap Eureka Blog
Learn More
PatSnap group products