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Gene probe composition for detecting idiopathic epilepsy, kit and applications

A gene probe and idiopathic technology, which is applied in the field of detection of idiopathic epilepsy gene probe composition, can solve the problem of inability to detect multiple gene exon regions at one time, inability to detect epilepsy, and inability to clarify the onset of the disease Mechanism disease typing and other issues, to achieve the effect of reducing the cost of testing, detecting genes accurately, and satisfying the maximum use

Active Publication Date: 2019-03-08
合肥新唯基因科技有限公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Routine detection of epilepsy patients of reproductive age before conception is relatively simple, and it is impossible to detect whether the offspring has hereditary epilepsy and its risk
At present, the clinical diagnosis of the disease is mainly based on the patient's clinical manifestations and laboratory tests. These methods cannot clarify the pathogenesis of the disease and the classification of the disease, especially idiopathic epilepsy in epilepsy.
[0003] In recent years, remarkable achievements have been made in the basic research on the pathogenesis of epilepsy, especially in the study of its molecular biology. There are many kinds of lesion genes involved in epilepsy, and the specific mutation sequence cannot be obtained intuitively by conventional PCR methods. However, the method of first-generation sequencing is affected by the sequencing throughput and cannot detect all the exon regions of multiple genes at one time. As a high-throughput detection method, next-generation sequencing can accurately measure the exon regions of multiple genes at one time. Exon and related sequences make it possible to accurately diagnose hereditary idiopathic epilepsy, but so far, no kit for high-throughput detection of idiopathic epilepsy has appeared

Method used

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  • Gene probe composition for detecting idiopathic epilepsy, kit and applications
  • Gene probe composition for detecting idiopathic epilepsy, kit and applications
  • Gene probe composition for detecting idiopathic epilepsy, kit and applications

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0031] Kit preparation

[0032] 1. Identify hotspot mutation sites of idiopathic epilepsy genes, screen candidate gene sites for idiopathic epilepsy, and determine inclusion in the kit.

[0033] Detecting idiopathic epilepsy gene probe composition, the difference is that the gene probe composition includes SCN2A gene probe, SCN1A gene probe, KCNQ2 gene probe, CHRNA4 gene probe, GABRA1 gene probe , GABRD gene probe, LGI1 gene probe, CLCN2 gene probe and CACNA1H gene probe.

[0034] In the above technical solution, the SCN2A gene probe includes the SCN2A G56A site test probe; the SCN1A gene probe includes the SCN1A G3199A site test probe, the SCN1A C5006A site probe and the SCN1A A1212G site test probe; The KCNQ2 gene test probe includes the KCNQ2 C912T site probe; the CHRNA4 gene probe includes the CHRNA4 T699C site test probe, the CHRNA4 G1209T site test probe, the CHRNA4 T678C site test probe, the CHRNA4 C851T site Test probes and CHRNA4 C189T site test probes; the GABRA1 gen...

Embodiment 2

[0038] Establishment of a high-throughput library of genes related to idiopathic epilepsy

[0039] Step (1) using the above kit to extract blood and extract genomic DNA;

[0040] Step (2) DNA fragmentation with Ion Xpress plus Fragment Library kit;

[0041] Step (3) Purify and select fragmented DNA with Agencourt AMPure XP beads;

[0042] The fragmented DNA library prepared in step (4) uses agarose or Agilent 2100 Bioanalyzer to detect the fragmentation quality of the DNA library;

[0043] Step (5) Use Sureselect Target Enrichment Kit Ion Box#2 and Herculase IIFusion DNA Polymerase to perform short-cycle amplification of the adapter-added fragmented DNA;

[0044] Step (6) Use Agencourt AMPure XP beads to purify the amplified adapter-added fragmented DNA; the specific reaction system is shown in Table 1, and the prepared reaction system is placed on a PCR instrument and incubated at 16°C for 16 hours;

[0045] Step (7) QIAxcel is used to perform quality control on the purifi...

Embodiment 3

[0059] The Ion Proton next-generation sequencing platform was washed once with chlorine and water as required, and then initialized and prepared reagents.

[0060] (1) Check the argon valve to 30psi, and the total pressure is not lower than 500psi.

[0061] (2) Wash the bottles of Wash 2 with 200ml water for 3 times, mark the 1920ml scale line, open the terminal valve to adjust to 0.5LPM, and inflate for 5 minutes. Then add water to the 1920ml mark, then add 80ml Ion PTMW2 Solution, then turn it upside down 5 times, then keep it inflated until use. Usually the pH is between 5 and 6, followed by initialization.

[0062] (3) To prepare Wash 3, add 1×W3 Solution to the 50ml mark.

[0063] (4) To prepare Wash 1, add 32μl 1mol / L NaOH to the bottom of the bottle.

[0064] (5) Start initialization.

[0065] Make sure a used chip is in place. Press "Initialize", select "Ion PITMSequencing 200 Kit" according to the prompt, press "next", the machine will automatically check the pre...

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Abstract

The invention provides gene probe composition for detecting idiopathic epilepsy, a kit and applications. The gene probe composition for detecting idiopathic epilepsy is different in that the gene probe composition comprises an SCN2A gene probe, an SCN1A gene probe, a KCNQ2 gene probe, a CHRNA4 gene probe, a GABRA1 gene probe, a GABRD gene probe, an LGI1 gene probe, a CLCN2 gene probe and a CACNA1Hgene. The detection kit is based on probe hybridization capture, has the advantages of high throughput and simultaneous detection of high-frequency mutation sites on a plurality of gene exons, and the disadvantages of high cost, long time consumption, complicated operation and the like of traditional single gene detection are changed. Detection of multiple genes in a single small sample is realized, and clinical practice requirements of maximum small sample utilization and maximum information amount acquisition are met.

Description

technical field [0001] The invention relates to the field of gene testing, in particular to a gene probe composition, kit and application for detecting idiopathic epilepsy. Background technique [0002] Epilepsy is one of the most common neurological diseases, divided into idiopathic epilepsy and secondary epilepsy. Studies have shown that although epilepsy is not classified as a genetic disease, its genetic predisposition is obvious. If the mother suffers from epilepsy, the risk of her offspring suffering from epilepsy is 2 to 4 times that of the normal population. Genetic factors are an important cause of epilepsy, especially classic idiopathic epilepsy. Molecular genetic studies have found that the molecular mechanism of most hereditary idiopathic epilepsy is the structural or functional changes of ion channels and related molecules. Routine detection before conception of epilepsy patients of childbearing age is relatively simple, and it is impossible to detect whether...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6883C12N15/11C40B50/06C40B40/06C12Q1/6869
CPCC12Q1/6869C12Q1/6883C12Q2600/156C40B40/06C40B50/06C12Q2535/122
Inventor 沈俊许小锋
Owner 合肥新唯基因科技有限公司
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