Gene probe composition for detecting idiopathic epilepsy, kit and applications
A gene probe and idiopathic technology, which is applied in the field of detection of idiopathic epilepsy gene probe composition, can solve the problem of inability to detect multiple gene exon regions at one time, inability to detect epilepsy, and inability to clarify the onset of the disease Mechanism disease typing and other issues, to achieve the effect of reducing the cost of testing, detecting genes accurately, and satisfying the maximum use
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Embodiment 1
[0031] Kit preparation
[0032] 1. Identify hotspot mutation sites of idiopathic epilepsy genes, screen candidate gene sites for idiopathic epilepsy, and determine inclusion in the kit.
[0033] Detecting idiopathic epilepsy gene probe composition, the difference is that the gene probe composition includes SCN2A gene probe, SCN1A gene probe, KCNQ2 gene probe, CHRNA4 gene probe, GABRA1 gene probe , GABRD gene probe, LGI1 gene probe, CLCN2 gene probe and CACNA1H gene probe.
[0034] In the above technical solution, the SCN2A gene probe includes the SCN2A G56A site test probe; the SCN1A gene probe includes the SCN1A G3199A site test probe, the SCN1A C5006A site probe and the SCN1A A1212G site test probe; The KCNQ2 gene test probe includes the KCNQ2 C912T site probe; the CHRNA4 gene probe includes the CHRNA4 T699C site test probe, the CHRNA4 G1209T site test probe, the CHRNA4 T678C site test probe, the CHRNA4 C851T site Test probes and CHRNA4 C189T site test probes; the GABRA1 gen...
Embodiment 2
[0038] Establishment of a high-throughput library of genes related to idiopathic epilepsy
[0039] Step (1) using the above kit to extract blood and extract genomic DNA;
[0040] Step (2) DNA fragmentation with Ion Xpress plus Fragment Library kit;
[0041] Step (3) Purify and select fragmented DNA with Agencourt AMPure XP beads;
[0042] The fragmented DNA library prepared in step (4) uses agarose or Agilent 2100 Bioanalyzer to detect the fragmentation quality of the DNA library;
[0043] Step (5) Use Sureselect Target Enrichment Kit Ion Box#2 and Herculase IIFusion DNA Polymerase to perform short-cycle amplification of the adapter-added fragmented DNA;
[0044] Step (6) Use Agencourt AMPure XP beads to purify the amplified adapter-added fragmented DNA; the specific reaction system is shown in Table 1, and the prepared reaction system is placed on a PCR instrument and incubated at 16°C for 16 hours;
[0045] Step (7) QIAxcel is used to perform quality control on the purifi...
Embodiment 3
[0059] The Ion Proton next-generation sequencing platform was washed once with chlorine and water as required, and then initialized and prepared reagents.
[0060] (1) Check the argon valve to 30psi, and the total pressure is not lower than 500psi.
[0061] (2) Wash the bottles of Wash 2 with 200ml water for 3 times, mark the 1920ml scale line, open the terminal valve to adjust to 0.5LPM, and inflate for 5 minutes. Then add water to the 1920ml mark, then add 80ml Ion PTMW2 Solution, then turn it upside down 5 times, then keep it inflated until use. Usually the pH is between 5 and 6, followed by initialization.
[0062] (3) To prepare Wash 3, add 1×W3 Solution to the 50ml mark.
[0063] (4) To prepare Wash 1, add 32μl 1mol / L NaOH to the bottom of the bottle.
[0064] (5) Start initialization.
[0065] Make sure a used chip is in place. Press "Initialize", select "Ion PITMSequencing 200 Kit" according to the prompt, press "next", the machine will automatically check the pre...
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