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Construction method and application of high-throughput sequencing library

A sequencing library, high-throughput technology, applied in the biological field, can solve the problems of long library construction process, waste of data, and limit the timeliness of clinical detection, and achieve the effect of wide application prospects.

Active Publication Date: 2019-04-05
深圳市艾斯基因科技有限公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0005] However, the target-targeted sequencing technology based on probe capture has a long library construction process, and it takes 1-2 days or even longer for the probe to fully bind to the target region, which greatly limits the timeliness of clinical testing.
In addition, the efficiency of hybrid capture is limited (usually only 50-60% capture efficiency), and the data wasted in non-target regions also virtually increases the cost of probe capture

Method used

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  • Construction method and application of high-throughput sequencing library

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 2

[0138] Example 2 Single-chain library construction + circular closure

[0139] Agilent liquid phase hybridization system (Agilent company) control example: a single sample is captured with 50M whole exon sequence (SureSelect Human All Exon 50Mb Kit)

[0140] experimental method:

[0141] The hybridization library construction process refers to the SureSelectXT Target Enrichment System for Illumina Paired-End Multiplexed Sequencing Library protocol. After 3ug of genomic DNA (extracted from human peripheral blood) is interrupted, the ends are filled in, "A" bases are added, and adapters (from Illumina Multiplexing Sample Preparation Oligonucleotide Kit). The single-stranded DNA library preparation method was used to prepare the single-stranded DNA library, and the primer sequences and blocked oligo sequences used are shown in Tables 1 and 2.

[0142] end repair

[0143] Prepare the following reagents in a 1.5ml centrifuge tube

[0144] Reagent

volume

frag...

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Abstract

The invention discloses a construction method and application of a high-throughput sequencing library. The method for constructing the high-throughput sequencing library comprises the steps that genomic DNA is fragmented, a basic group A is added to the 3'end of a DNA fragment subjected to end repairing, the DNA fragment is connected with joints, amplification is conducted, then a DNA library is mixed with annular closed oligonucleotides and a specific probe so as to conduct hybrid capturing, and the introduced joints and an introduced tag sequence are closed by the annular closed oligonucleotides, wherein the annular closed oligonucleotides are designed for the joints and the tag sequence, and the annular closed oligonucleotides and the joint sequences at the two ends of the library sequence are subjected to complementary pairing; and a connecting product is subjected to hybrid capturing through the specific probe so as to obtain a target fragment. According to the construction methodand application of the high-throughput sequencing library, a DNA template closing the sequencing joint sequences in an annular mode is captured, and the efficiency of capturing the target DNA sequence by the probe is improved.

Description

technical field [0001] The present invention relates to the field of biotechnology. In particular, it relates to targeted sequencing techniques involving the determination of target DNA fragments of a sample. More specifically, the present invention provides a method for constructing a high-throughput sequencing library, a sequencing method for determining a target DNA fragment of a sample, a device for determining a sample target DNA fragment, and a method for constructing a sample target DNA fragment. A kit for high-throughput sequencing libraries of DNA fragments. Background technique [0002] The new-generation high-throughput sequencing technology that has emerged in recent years can simultaneously sequence billions of DNA fragments, providing a powerful tool for basic biomedical research and clinical testing. Whole-genome sequencing is widely used in the field of basic scientific research due to its comprehensive and comprehensive detection performance. However, the ...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6806C12N15/10C12N15/11C40B50/06
CPCC12N15/1093C12Q1/6806C40B50/06C12Q2525/191C12Q2525/307C12Q2531/113C12Q2521/319C12Q2535/122
Inventor 张巨永卢瀚林
Owner 深圳市艾斯基因科技有限公司
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