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A kind of solid phase carrier for in situ synthesis of nucleic acid and its preparation method

An in-situ synthesis, solid-phase carrier technology, applied in the field of gene chips, can solve the problems of reduced oligonucleotide synthesis capacity, CPG preparation technology defects, and few types of oligonucleotide sequences, and achieves reduction of steric hindrance effect, The effect of reducing the effect of electronic interference and optimizing the load capacity

Active Publication Date: 2021-05-07
杭州原合生物科技有限公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

With the need for in-situ synthesis of oligonucleotide sequences, the disadvantages of this type of oligonucleotide column synthesizer have become more and more prominent. There are two main problems in the oligonucleotide column synthesizer: one is due to The limitations of the packed column lead to a small throughput of the synthesizer, and the types of oligonucleotide sequences synthesized per unit time are relatively small, which can no longer meet the current market demand; on the other hand, due to the limitations of the existing solid-phase carrier CPG preparation technology caused by defects
Since the current commercialized CPG is only realized on porous glass, due to the influence of porous glass itself on the adsorption of nucleic acids, the longer the oligonucleotide synthesis chain is in the process of oligonucleotide synthesis using the existing commercialized CPG , the defect of reduced oligonucleotide synthesis ability (including the purity and synthesis efficiency of oligonucleotide synthesis)

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  • A kind of solid phase carrier for in situ synthesis of nucleic acid and its preparation method
  • A kind of solid phase carrier for in situ synthesis of nucleic acid and its preparation method
  • A kind of solid phase carrier for in situ synthesis of nucleic acid and its preparation method

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preparation example Construction

[0039] Therefore, according to the first aspect of the present invention, there is provided a method for preparing a solid phase carrier for nucleic acid in situ synthesis, wherein the method comprises:

[0040] (1) performing a first amination treatment on the solid phase substrate with a first amination modification reagent to obtain a first aminated solid phase substrate;

[0041] (2) modifying the first aminated solid phase substrate with a linker modification reagent to obtain a grafted solid phase substrate;

[0042] (3) performing a second amination treatment on the grafted solid phase substrate with a second amination modification reagent to obtain a second aminated solid phase substrate; and

[0043] (4) Linking a cleavable linker with a protecting group to the second aminated solid phase substrate to obtain a solid phase carrier.

[0044] In a specific embodiment, the method for preparing a solid phase carrier for nucleic acid in situ synthesis comprises:

[0045] (1...

Embodiment 1

[0079] In this embodiment, a nucleic acid chip is prepared by using a quartz glass slide as a solid-phase substrate, wherein the specification of the quartz glass slide is 25 mm·75 mm for a standard slide glass.

[0080] The first amination treatment of quartz glass slides: take two quartz glass slides and place them in the processed reaction vessel, add 20ml (concentrated sulfuric acid: hydrogen peroxide = 7:3) reaction solution to it, and react under ultrasonic conditions at 70°C for 3h , washed with deionized water, blown dry with nitrogen, and then added 20ml of ethanol solution of 5% 3-aminopropyltriethoxysilane to it, and reacted for 24h under ultrasonic conditions at 50°C. After the reaction was completed, use Washed with deionized water and placed in an oven at 110°C for overnight curing to obtain the first aminated glass slide.

[0081] Long-chain grafting of quartz glass slides: Place active aminated quartz glass slides in a reaction vessel, add 600mg 11-bromoundecan...

Embodiment 2

[0085] In this example, a nucleic acid chip was prepared using porous glass beads as a solid phase substrate.

[0086] The first amination treatment of porous glass beads: take 2g of porous glass beads and place them in a 50ml centrifuge tube, wherein the diameter of the porous glass beads is about 90 μm-110 μm, and the pore size is Add 40ml of reaction solution (concentrated sulfuric acid:hydrogen peroxide=7:3) to it, react under ultrasonic conditions at 70°C for 3h, centrifugally wash with deionized water, blow dry with nitrogen, and then add 3-aminopropane with a concentration of 5% 40ml of ethanol solution of triethoxysilane was reacted at 50°C for 24h under ultrasonic conditions. After the reaction was completed, it was centrifuged and washed with deionized water and placed in an oven at 110°C for overnight curing to obtain the first aminated porous glass beads .

[0087] Long-chain branching of porous glass beads: Weigh 100 mg of aminated porous glass beads and place t...

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Abstract

The invention provides a method for preparing a solid-phase carrier for nucleic acid in-situ synthesis. The preparation method separately performs the first amination treatment, long-chain modification and second amination treatment on the solid-phase substrate to form a A long-chain organic linker is formed on the surface of the surface, and then a cleavable linker is grafted to form a solid-phase carrier, thereby providing a set of reaction systems that can efficiently synthesize nucleic acids in situ, thereby achieving efficient synthesis of nucleic acids. In addition, a solid phase carrier prepared by the above preparation method and a nucleic acid chip comprising the above solid phase carrier are also provided. Through the preparation method of the present invention, effective selection of solid phase substrates can be realized, and the efficiency of nucleic acid in-situ synthesis and the purity of nucleic acid products can be further improved.

Description

technical field [0001] The invention relates to the field of gene chips, in particular to a solid-phase carrier for nucleic acid in-situ synthesis and a preparation method thereof. Background technique [0002] At present, the in situ synthesis of oligonucleotides by phosphoramidite method has been widely used. In this method, the nucleoside at the 3'-end of the oligonucleotide to be synthesized needs to be pre-loaded on a solid phase carrier via a cleavable linker, and then the carrier is put into a reaction column and installed on the oligonucleotide. Oligonucleotides were automatically synthesized on an automatic synthesis device. The synthesis steps are as follows: [0003] [0004] (1) deprotecting the 5'-OH group of the nucleoside by using a deprotection reagent; [0005] (2) The phosphoramidite nucleoside monomer reacts with the exposed 5'-OH group in the presence of an activator; [0006] (3) Capping the unreacted 5'-OH group by a capping reagent; [0007] (4...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12N15/10
CPCC12P19/34
Inventor 王武郑晖蔡万世
Owner 杭州原合生物科技有限公司