Method to enhance the transcription regulation of SUPT4H on genes containing repetitive nucleotide sequences

A repeat sequence, nucleotide technology, applied in gene therapy, genetic engineering, biochemical equipment and methods, etc., can solve problems such as toxicity, defective genes, and unclear molecular mechanisms

Pending Publication Date: 2021-01-26
TAIWAN STRATEGICS INTPROP CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Trinucleotide repeat expansions can occur in the coding sequence or introns of a gene, and disease occurs when the number of nucleotide repeats exceeds a normal, stable threshold, and the number of repeats required for each gene to produce disease Slightly different; if the trinucleotide repeat expansion is present in the coding sequence of the gene, the mutation may result in a defective gene, and if the trinucleotide repeat expansion is present in an intron, it may form an RNA focus in the nucleus, cause toxic effects
However, the molecular mechanism of why SPT4 / SUPT4H assistance is required through highly repetitive nucleotide sequences during transcription elongation remains unclear.

Method used

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  • Method to enhance the transcription regulation of SUPT4H on genes containing repetitive nucleotide sequences
  • Method to enhance the transcription regulation of SUPT4H on genes containing repetitive nucleotide sequences
  • Method to enhance the transcription regulation of SUPT4H on genes containing repetitive nucleotide sequences

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0067] Embodiment 1. Experimental material and method:

[0068] A. Yeast strains and plastids

[0069] Yeast strains with gene deletion were generated by the one-step gene replacement method and confirmed by PCR (Liu et al., 2012). The ORFs of SPT4 and RNH1 in W303-1A cells were replaced by KanMX and NatMX, respectively To obtain SPT4Δ (SPT4 gene knockout (gene knock-out, gene knockout)) or RNH1Δ (RNH1 gene knockout) strains.

[0070] Plastids with different lengths and nucleotide sequences, including repeat sequences CA, CAA, CAG, CAAC and CAACCA, were prepared by the technical method disclosed in (Liu et al., 2012). Using yeast chromosomal DNA as a template, the full-length TOP1 gene coding sequence and the N-terminal part of SEN1 (encoding amino acid residues 1 to 1017) were amplified by PCR, and the amplified product of TOP1 (by SmaI-TOP1F and TOP1-NotI R primer) and the amplified products of SEN1 (via SmaI-SEN1F and SEN1-NotI R primers) were inserted into the gene expre...

Embodiment 2

[0097] Example 2: The formation of R-loops in transcription is affected by the number of CAG repeats, but not by SPT4 in yeast cells.

[0098] Figure 2A Amplicons on (CAG)n-ADE2 plasmids by primer set B and primer set Amp are shown. (CAG)n-ADE2 comprises the ADE2 reporter gene fused to repeats of 10, 25, 49 or 99 CAGs. The fusion gene was under the control of the GAL1 promoter (pGAL1) to induce (CAG)n-ADE2 expression by culturing the cells in a medium containing 2% galactose. Primer set B amplifies the last 3 CAG repeat sequences of DNA to the position of repeat unit 200bps. Primer set Amp amplification amp R The gene is used as the control group, and the primer group Amp does not produce R-loops. ; Figure 2B R-loops signal on (CAG) n-ADE2 during transcription analysis by RNA / DNA Hybridization Precipitation (DIP) method is shown. use (CAG) 10 -ADE2, (CAG) 25 -ADE2 or (CAG) 49 -ADE2 was introduced into wild-type (WT) cells grown in galactose-containing medium and the...

Embodiment 3

[0100] Example 3: In Spt4-deficient cells, increasing the formation of R-loops reduces the transcriptional effect of CAG repeats.

[0101] Figure 3A Shows signaling of R-loops in wild-type (WT), RNH1Δ(Δ1), SPT4Δ(ΔS), and RNH1ΔSPT4Δ double-deleted (Δ1ΔS) cells, feeding these cells into (CAG) 99 -ADE2, grown in a medium containing galactose, and then analyzed for R-loops signal by DIP. The experimental data is compared with the Amp-RNase H+ sample after normalization, such as Figure 2B Said (N=3; * represents P Figure 3B Shows the expression level of (CAG)n-ADE2 mRNA measured by Northern blotting in WT, Δ1, ΔS and Δ1ΔS cells. Will (CAG) 25 -ADE2 or (CAG) 99 - ADE2 was transfected (transformed) into cells, and then RNA was obtained for quantitative analysis. After correction, as described in Figure 2D, (CAG) in WT cells 99 - The expression level of ADE2 mRNA was set as 100% (N=3). Figure 3C It is a schematic diagram of the amplicon formed by primer set A and primer set ...

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Abstract

Provided is a method of modulating the expression of a gene containing expanded nucleotide repeats in a cell, comprising: inhibiting the biological activity of SPT4 or SUPT4H; and regulating the formation of R-loops. The inhibition step can effectively reduce the expression of the gene containing the expanded nucleotide repeats and the regulatory step can further enhance the inhibition step. The inhibition step and the regulation step are for the purpose of regulating gene expression by interfering the capacity of RNA polymerase II transcribing over a DNA template with lengthy nucleotide repeats.

Description

technical field [0001] The non-provisional application claiming priority was filed in the United States on January 22, 2018 under 35 U.S.C. § 119(a) of the United States Patent Code under Patent No(s).(62 / 620,308), the patents listed above All the reference documents are cited as the disclosure content of this specification. Background technique [0002] Nucleotide repeat expansion diseases include a group of hereditary disorders caused by the instability and expansion of simple tandem repeats, usually trinucleotide repeats. Pathogenic nucleotide repeat expansions can occur in genes In diseases such as Friedreich's Ataxia, in coding or non-coding sequences, the expansion of non-coding sequences leads to silencing or downregulation of gene transcription, resulting in loss of gene function, so it is recessive inheritance. In contrast, in the condition of Huntington's disease, a CAG trinucleotide expansion occurs in the coding sequence of the gene, so that the resulting protei...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): A61K48/00C12N15/63A61P25/28A61P25/14
CPCA61P25/14A61P25/28C12N15/63C12N15/113C12N2310/14A61P25/00A61K31/122A61K31/4745A61K31/7105C12N2320/31
Inventor 郑子豪刘珈荣林则毅吴畇芸柯史坦
Owner TAIWAN STRATEGICS INTPROP CO LTD
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