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Methylation marker and kit for assisting cancer diagnosis

An auxiliary diagnosis and methylation technology, applied in the medical field, can solve the problems of low diagnostic value of early patients, susceptibility to liver function and cholestasis, low sensitivity of early patients, etc., and achieve the effect of reducing the effect of diagnosis and treatment

Pending Publication Date: 2022-05-17
南京腾辰生物科技有限公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

At present, the commonly used clinical diagnostic methods for pancreatic cancer include: 1. Imaging methods such as ultrasound, enhanced CT, and magnetic resonance imaging (MRI). Limitations; usually, ultrasonographic diagnosis of pancreatic cancer can be used as a supplementary examination of CT, but enhanced CT has greater radiation to the human body, so it is not easy to use frequently; MRI has no radiation effects, but it is not suitable for some people (there are metals in the body Items and cardiac pacemakers, etc.), the inspection takes a long time, because the equipment is relatively expensive, some small and medium hospitals have not yet popularized
2. Clinically, some serum tumor markers such as CA19-9, CA242, CA50, etc. will be combined for further detection. The above tumor markers have high sensitivity, but low specificity, and are easily affected by liver function and cholestasis.
3. Pathological examination: percutaneous biopsy, biopsy guided by ultrasound gastroscope, ascites exfoliated cytology examination, and exploratory biopsy under laparoscopy or laparotomy, but this method is invasive examination and is not suitable for early stage patients
Esophagoscopy: Esophagoscopy can observe the location, size and shape of the lesion in detail, and can also directly take pathological tissue or use a brush to take specimens for cytological examination, but it will cause discomfort to the patient
2. X-ray barium meal contrast: the patient swallows barium porridge during X-ray examination, observes the development of barium porridge when it passes through the esophagus, and achieves a qualitative and localized diagnosis. Esophageal Cancer Patients
3. CT scan: It can show the relationship between the patient's esophagus and adjacent organs, but its disadvantage is that it has low sensitivity for early patients
4. Commonly used tumor markers, such as CA72-4, CA19-9, CEA, CYFRA21-1 and squamous cell carcinoma-related antigen (SCC), can be used for the diagnosis of esophageal cancer, but their sensitivity is less than 40%, and their specificity Low, especially for early patients with low diagnostic value

Method used

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  • Methylation marker and kit for assisting cancer diagnosis
  • Methylation marker and kit for assisting cancer diagnosis
  • Methylation marker and kit for assisting cancer diagnosis

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0157] Embodiment 1, be used to detect the primer design of DHODH gene methylation site

[0158] After extensive sequence and functional analysis, three fragments (DHODH_A fragment, DHODH_B fragment, DHODH_C fragment) in the DHODH gene were selected for methylation level and cancer correlation analysis.

[0159] The DHODH_A fragment (SEQ ID No.1) is located at chr16:72040500-72040866 of the hg19 reference genome, the sense strand. The DHODH_B fragment (SEQ ID No.2) is located at chr16:72041157-72041714 of the hg19 reference genome, the sense strand. The DHODH_C fragment (SEQ ID No.3) is located at chr16:72041946-72042720 of the hg19 reference genome, the sense strand.

[0160] The CpG site information in the DHODH_A fragment is shown in Table 1.

[0161] The CpG site information in the DHODH_B fragment is shown in Table 2.

[0162] The CpG site information in the DHODH_C fragment is shown in Table 3.

[0163] Table 1 CpG site information in DHODH_A fragment

[0164] ...

Embodiment 2

[0172] Example 2, DHODH gene methylation detection and result analysis

[0173] 1. Research samples

[0174] With the informed consent of the patients, a total of 722 patients with lung cancer, 152 patients with benign nodules in the lungs, 79 patients with pancreatic cancer, 118 patients with esophageal cancer and 945 cancer-free controls were collected. Ex vivo blood samples from patients with cancer and no pulmonary nodules reported and blood routine indicators are within the reference range).

[0175] All patient samples were collected preoperatively and confirmed radiographically and pathologically.

[0176] Lung, pancreatic, and esophageal cancer subtypes were judged based on histopathology.

[0177] Lung cancer staging is based on the AJCC 8th edition staging system.

[0178] The 722 cases of lung cancer patients were divided according to the type: 619 cases of lung adenocarcinoma, 42 cases of lung squamous cell carcinoma, 49 cases of small cell lung cancer, and 12 c...

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Abstract

The invention discloses a methylation marker and a kit for auxiliary diagnosis of cancers. The invention provides an application of a methylated DHODH gene as a marker in preparation of a product. The application of the product is at least one of the following: auxiliary diagnosis of cancer or prediction of cancer risk; the method assists in distinguishing benign nodules and cancers; assisting in distinguishing different subtypes of cancers; different stages of cancers are distinguished in an auxiliary manner; different cancers can be distinguished in an auxiliary manner; determining whether the to-be-detected object has a hindering or promoting effect on the occurrence of the cancer or not; the cancer can be lung cancer, pancreatic cancer or esophageal cancer. The invention finds the hypomethylation phenomenon of DHODH genes in the blood of patients with lung cancer, pancreatic cancer and esophageal cancer, and has important scientific significance and clinical application value for improving the early diagnosis and treatment effects of lung cancer, pancreatic cancer and esophageal cancer and reducing the death rate.

Description

technical field [0001] The invention relates to the medical field, in particular to a methylation marker and a kit for assisting cancer diagnosis. Background technique [0002] Lung cancer is a malignant tumor that occurs in the bronchial mucosal epithelium. In recent years, although there have been new advances in diagnostic methods, surgical techniques, and chemotherapy drugs, the overall 5-year survival rate of lung cancer patients is only 16%, mainly because most lung cancer patients have already metastasized when they see a doctor and have lost radical surgery. Opportunity. Studies have shown that the prognosis of lung cancer is directly related to the stage. The 5-year survival rate of stage I lung cancer is 83%, that of stage II is 53%, that of stage III is 26%, and that of stage IV is 6%. Therefore, the key to reducing the mortality of lung cancer patients lies in early diagnosis and early treatment. At present, the main methods for lung cancer diagnosis are as fo...

Claims

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Application Information

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IPC IPC(8): C12Q1/6886C12N15/11
CPCC12Q1/6886C12Q2600/154C12Q2600/112
Inventor 狄飞飞韦玉杰王俊
Owner 南京腾辰生物科技有限公司