Methylation marker and kit for assisting cancer diagnosis
An auxiliary diagnosis and methylation technology, applied in the medical field, can solve the problems of low diagnostic value of early patients, susceptibility to liver function and cholestasis, low sensitivity of early patients, etc., and achieve the effect of reducing the effect of diagnosis and treatment
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Embodiment 1
[0157] Embodiment 1, be used to detect the primer design of DHODH gene methylation site
[0158] After extensive sequence and functional analysis, three fragments (DHODH_A fragment, DHODH_B fragment, DHODH_C fragment) in the DHODH gene were selected for methylation level and cancer correlation analysis.
[0159] The DHODH_A fragment (SEQ ID No.1) is located at chr16:72040500-72040866 of the hg19 reference genome, the sense strand. The DHODH_B fragment (SEQ ID No.2) is located at chr16:72041157-72041714 of the hg19 reference genome, the sense strand. The DHODH_C fragment (SEQ ID No.3) is located at chr16:72041946-72042720 of the hg19 reference genome, the sense strand.
[0160] The CpG site information in the DHODH_A fragment is shown in Table 1.
[0161] The CpG site information in the DHODH_B fragment is shown in Table 2.
[0162] The CpG site information in the DHODH_C fragment is shown in Table 3.
[0163] Table 1 CpG site information in DHODH_A fragment
[0164] ...
Embodiment 2
[0172] Example 2, DHODH gene methylation detection and result analysis
[0173] 1. Research samples
[0174] With the informed consent of the patients, a total of 722 patients with lung cancer, 152 patients with benign nodules in the lungs, 79 patients with pancreatic cancer, 118 patients with esophageal cancer and 945 cancer-free controls were collected. Ex vivo blood samples from patients with cancer and no pulmonary nodules reported and blood routine indicators are within the reference range).
[0175] All patient samples were collected preoperatively and confirmed radiographically and pathologically.
[0176] Lung, pancreatic, and esophageal cancer subtypes were judged based on histopathology.
[0177] Lung cancer staging is based on the AJCC 8th edition staging system.
[0178] The 722 cases of lung cancer patients were divided according to the type: 619 cases of lung adenocarcinoma, 42 cases of lung squamous cell carcinoma, 49 cases of small cell lung cancer, and 12 c...
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