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Detection method using kit for detecting plurality of target nucleic acids

a detection method and target nucleic acid technology, applied in the direction of microorganism testing/measurement, hydrolases, biochemistry apparatus and processes, etc., can solve the problems of long method time, high cost, and long time-consuming process of independent measurement, so as to achieve excellent practical performance and shorten measurement time and analysis time

Pending Publication Date: 2022-02-10
MIZUHO MEDY
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

The present invention provides a kit and a detection method for multiple target nucleic acids using a single reaction vessel and a single label. The kit includes a solution containing a first and second target nucleic acid, a first and second target primer, a first and second target probe, DNA polymerase, deoxyribonucleoside triphosphate, and a second target probe. The detection method involves calculating the fluorescence intensity of the first and second targets in real-time during amplification and denaturation steps. The kit and method provide a reliable and efficient way to detect multiple target nucleic acids simultaneously.

Problems solved by technology

The first process of performing the independent measurement requires long time and high costs.
The second process of distinguishing different labeling substances from each other costs too much because the second process needs not only preparing plural kinds of labeled reagents but also complicated wavelength-setting in an analyzer.
There is a problem that the method requires a long time.
In other words, the analyzer costs too much.
This is a serious problem.
If the temperature is changed speedily upon the melting curve analysis, it becomes difficult to identify melting temperature for each gene.
Accordingly, there is a problem that extra time of about 5 to 10 minutes after PCR is required.
Accordingly, too many conditions should be taken into consideration, design of the profile is also difficult, and time for measurement must be too long.
Furthermore, there is another problem that temperature must be drastically changed to task the device.
As mentioned above, a common problem upon simultaneously amplifying multiple genes by means of one reaction vessel containing one kind of reaction solution is that fluorescent signals interfere with each other to make distinction there-between impossible caused by base sequences of target genes and / or probes.

Method used

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  • Detection method using kit for detecting plurality of target nucleic acids
  • Detection method using kit for detecting plurality of target nucleic acids
  • Detection method using kit for detecting plurality of target nucleic acids

Examples

Experimental program
Comparison scheme
Effect test

embodiment 1

[0070]Nisseria gonorrhoeae Cytosine Methyltransferase CMT Genes According to the QProbe Method>

[0071]Detection of Chlamydia trachomatis and Neisseria gonorrhoea is performed according to the QProbe method at the same time.

[0072]In Embodiment 1, pCT having a first target sequence of internal plasmid with respect to Chlamydia trachomatis and pNG having a second target sequence of cytosine methyltransferase with respect to of Neisseria gonorrhoea are applied to nucleic acid samples, respectively to perform PCR thereon. After that, judgment is performed by means of two kinds of QProbes corresponding to the first and second target sequences, respectively.

[0073]

[0074]A pair of primers used for the PCR method in Embodiment 1 is as shown in Table 1.

TABLE 1NameSequence(5′→3′)Chl 42FTTGCAGCTTGTAGTCCTGCTTGAGAGSEQ No. 1Chl 39RGCACTTTCTACAAGAGTACATCGGTCAACGAAGAGSEQ NO. 2NG F11TCCTCAGGGCGTGGTTGAACTGGCSEQ NO. 3NG R13CCCCTCGAATTTTGCTTAGTCGGTCATGGSEQ No. 4

[0075](Nucleic Acid Sample)

[0076]Nucleic aci...

embodiment 2

[0144]

[0145]When a patient is infected with Chlamydia trachomatis and Neisseria gonorrhoea in a mixed mode, only one of them presenting a stronger symptom may be diagnosed, and the other of them may be missed in some cases.

[0146]Effective medicines for Chlamydia trachomatis and Neisseria gonorrhoea differ from each other. Accordingly, it may be highly helpful clinically to distinguish the mixed infections by means of genetic screening.

[0147]Upon simultaneously amplifying and detecting multiple genes by means of one reaction vessel containing one kind of reaction solution by means of one kind of labels, fluorescence change caused by the respective labeling probes may interfere with each other. For this reason, it may be said that such distinction between these mixed infections has comparatively high difficulty.

[0148]In Embodiment 2, while using the materials and the methods in Embodiment 1, Chlamydia trachomatis positive and Neisseria gonorrhoea positive samples will now be measured ...

embodiment 3

[0168]Mycoplasma 23 S rRNA Gene According to QProbe Method No. 1>

[0169]The Mycoplasma 23 S rRNA genes will now be detected according to the QProbe method to distinguish one base sequence variation within the same.

[0170]

[0171][Primer]

[0172]A pair of primers used for the PCR method in Embodiment 3 is as shown in Table 7.

TABLE 7NameSequence(5′→3′)MCR F6CTCGGTGAAATCCAGGTACGGGTGAAGACSEQ No.7MCR R6GCATCGATTGCTCCTACCTATTCTCTACATGATAATGTCCSEQ No. 8

[0173](Nucleic Acid Sample)

[0174]Nucleic acid samples used for the PCR method in Embodiment 3 are shown below.

[0175]It is known that strains resistant to macrolide-based drugs which are antimicrobial agents for Mycoplasma pneumoniae have variation in the base sequence of 23S rRNA gene.

[0176]Herein, target sequence without the variation in the 23 S rRNA gene and a target sequence wherein a base of “A” in the 2063rd site thereof has varied to another base of “G” are used for nucleic-acid samples, and then PCR is performed thereon, respectively.

[0177...

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Abstract

The present invention provides a method for detecting multiple target nucleic acids, the method making it possible to amplify a plurality of genes using one reaction vessel containing therein one type of reaction solution and further using a single label. Computation is performed in accordance with the following formulas for every specific cycle and / or every cycle during amplification reaction using a kit for detecting the multiple target nucleic acids. (Formula 1): f1[n]=fhyb.1[n] / fden.1[n], (Formula 1′): f2[n]=fhyb.2[n] / fden.2[n], (Formula 2): Fr[n]=(a−f2 [n]) / (a−f1 [n]).fhyb.1 [n]: Fluorescence intensity value in elongation step of first target nucleic acid detecting step. The same hereinafter.

Description

BACKGROUND OF THE INVENTION1. Field of the Invention[0001]The present invention relates to a detection method using a kit for detecting multiple target nucleic acids, the kit improving the PCR method and further measuring the multiple target nucleic acids.2. Description of the Related Art[0002]In genetic screening, it is necessary to measure multiple target nucleic acids in many cases. For example, the multiple target nucleic acids may be: a first pair of influenza type A and influenza type B; a second pair of influenza and RSV / human metapneumovirus; a third pair of Chlamydia and Nisseria gonorrhoeae, which may cause sexually transmitted diseases; a fourth pair of Mycoplasma and resistance factor thereof; and so on.[0003]Regarding the multiple target nucleic acids in some pairs of the above, the conditions of patients are similar to each other and also infection of the same expands simultaneously. So, it is conceivable to distinguish the multiple target nucleic acids from each other...

Claims

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Application Information

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IPC IPC(8): C12Q1/686C12N9/22C12Q1/6818
CPCC12Q1/686C12Q1/6818C12N9/22C12Q2527/107C12Q2537/143C12Q2537/165C12Q2563/107G16B40/10
Inventor NAGANO, TAKASHIEBISU, KOICHINARAHARA, KENJIICHIMARU, KAZUHIRO
Owner MIZUHO MEDY