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Method for high-flux sequencing for establishing of human miRNA (micro-ribonucleic acid) sequencing library

A sequence and probe technology, which is applied in the field of high-throughput sequencing for the construction of human miRNA sequencing libraries, can solve the problems of poor miRNA library construction effects, improve detection sensitivity, shorten library construction and sequencing cycles, and reduce costs Effect

Active Publication Date: 2018-06-08
SUN YAT SEN UNIV +1
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0004] However, the current mmPCR-seq is mainly suitable for the effective construction of mRNA library sequencing, and the construction effect of miRNA library is not very good.

Method used

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  • Method for high-flux sequencing for establishing of human miRNA (micro-ribonucleic acid) sequencing library
  • Method for high-flux sequencing for establishing of human miRNA (micro-ribonucleic acid) sequencing library
  • Method for high-flux sequencing for establishing of human miRNA (micro-ribonucleic acid) sequencing library

Examples

Experimental program
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Effect test

Embodiment 1

[0059] Example 1 Probes specifically targeting microRNA (miRNA) in humans and a method for using this batch of probes to construct a miRNA sequencing library for high-throughput sequencing

[0060] 1. Design probe

[0061] Design the ultra-high multiplex PCR probe of specific amplification miRNA, the region of the miRNA precursor (pre-miRNA) that described probe specific target amplification is covered on people's pri-miRNA, described probe altogether 712 pairs, The primer sequences are shown in Table 1, and most of the probe amplification products are 160-300 bp in length.

[0062] Table 1 Probe sequence list for targeting amplification of human miRNA precursor region

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[0088] ...

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Abstract

The invention discloses a method for high-flux sequencing for establishing of a human miRNA (micro-ribonucleic acid) sequencing library. The method comprises the following steps of S1, extracting human total RNA, and reversing into cDNA (complementary deoxyribonucleic acid); S2, using the cDNA as a template, using a probe to perform mmPCR (multi-multiplex polymerase chain reaction) pre-amplification and mmPCR amplification on miRNA in a sample, and respectively connecting a 3' terminal and a 5' terminal to both ends of an amplified product; S4, connecting a tag sequence with a mmPCR amplifiedproduct; S5, performing gel electrophoresis on the sample added with the tag sequence, recycling a pure electrophoresis product, and building the miRNA library; S6, mixing the obtained multiple miRNAlibraries, and utilizing a next generation sequencing technique to perform high-flux sequencing. The method has the advantages that the detection sensitivity of RNA editing and modifying on the precursor miRNA is greatly improved, the uniformity of the RNA-targeted sequencing libraries is improved, the library building and sequencing cycle is shortened, the cost is reduced, and the application prospect is larger.

Description

technical field [0001] The invention belongs to the technical field of molecular biology. More specifically, it relates to a method for constructing a human miRNA sequencing library for high-throughput sequencing. Background technique [0002] Since 2006, nucleic acid sequencing technology has made a revolutionary breakthrough. Next Generation Sequencing technology (NextGeneration Sequencing, NGS) can quickly determine millions of sequences, technically realizing a comprehensive analysis of the transcriptome and genome of a species . In particular, the generation of high-throughput transcriptome sequencing technology (RNA-seq). Transcriptome sequencing (RNA-seq) is the use of NGS technology to sequence, comprehensively and quickly obtain almost all transcripts of a species or a specific organ or tissue in a certain state, and analyze the entire transcriptome, tissue or cell in an individual, tissue or cell. Small RNA content, or gene expression profiling, is currently a p...

Claims

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Application Information

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IPC IPC(8): C12Q1/6869C12Q1/686C12Q1/6888C12N15/11
CPCC12Q1/686C12Q1/6869C12Q1/6888C12Q2600/178C12Q2535/122C12Q2565/629C12Q2525/10
Inventor 张锐顾南南李丽诗宋玉龙
Owner SUN YAT SEN UNIV
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