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RPA (recombinase polymerase amplification) primer and RPA probe for detecting influenza B viruses, kit and application of RPA primer

A technology of influenza B virus and influenza A virus, which is applied to probes, RPA primers for detecting influenza B virus, kits and application fields, can solve the problems of expensive instruments, inapplicability, and slow amplification speed, and achieve Easy to operate, short time-consuming, highly specific effect

Pending Publication Date: 2019-05-24
NANJING GENERAL HOSPITAL NANJING MILLITARY COMMAND P L A
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Polymerase chain reaction (PCR) technology is a common method for molecular amplification, but PCR technology has high requirements for hardware equipment, instruments are usually expensive, and the amplification speed is slow, so the existing recombinase polymerase amplification (RPA ) technology came into being. RPA technology has low requirements on hardware equipment. It is an isothermal amplification technology, which greatly improves the reaction speed.
The key to RPA technology lies in the design of probes and primers, but most of the probes and primers used in PCR amplification are not suitable for RPA technology

Method used

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  • RPA (recombinase polymerase amplification) primer and RPA probe for detecting influenza B viruses, kit and application of RPA primer
  • RPA (recombinase polymerase amplification) primer and RPA probe for detecting influenza B viruses, kit and application of RPA primer
  • RPA (recombinase polymerase amplification) primer and RPA probe for detecting influenza B viruses, kit and application of RPA primer

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Embodiment Construction

[0025] According to the non-structural protein (Flu B NS) gene of influenza B virus published in the GeneBank database, the software DNAMAN was used for sequence alignment, and the primers and probes were designed as follows:

[0026]

[0027] Wherein, B-F is an upstream primer, B-R is a downstream primer, and SEQ ID NO.2 is a probe.

[0028] The label of the RPA probe of influenza B virus can be a fluorescent group or a drug or a photosensitizer or a medical contrast agent. In this embodiment, digoxin (DIG) is selected as its modifier.

[0029] The 5' end and the 3' end of the RPA probe of the influenza B virus used in this example are respectively labeled digoxin (DIG) and interarm Spacer (C3), and thymine at position 33 of the sequence is replaced by tetrahydrofuran, which is: DIG -GTTCCTCAAATAGCAACTGTCCGAAATACAAT-THF-GGACCGATTACCCTT-spacer (C3).

[0030] The RPA downstream primer B-R of the influenza B virus used in this example is labeled with biotin, which is Biotin...

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Abstract

The invention belongs to the field of molecular biological detection, and relates to an RPA (recombinase polymerase amplification) primer and an RPA probe for detecting influenza B viruses, a kit andapplication of the RPA primer. The sequences of upstream and downstream primers are B-F and B-R, and the sequence of the probe is represented by SEQ ID. NO. 2. The RPA primer and the RPA probe for detecting the influenza B viruses can be used for rapidly detecting the influenza B viruses or simultaneously detecting influenza A and B viruses; the RPA downstream primer for the influenza B viruses can serve as a PCR amplification primer for the influenza B viruses. When the RPA primer and the RPA probe are used for detecting the influenza B viruses, the detection time is short, sensitivity and specificity are high, and the influenza A and B viruses can be simultaneously detected rapidly, accurately and specifically.

Description

technical field [0001] The invention relates to the technical field of molecular biology detection, in particular to an RPA primer, probe, kit and application for detecting influenza B virus. Background technique [0002] Influenza is mainly an infectious respiratory disease caused by influenza viruses A (FluA) and B (Flu B), with a global death toll of up to 650,000. Usually, influenza requires antiviral treatment within 48 hours of the onset of illness, and rapid diagnosis of influenza virus can significantly reduce the abuse of antibiotics and implement necessary infection control measures. Under normal circumstances, doctors will realize the diagnosis of influenza virus based on the patient's clinical symptoms. However, other viruses or bacteria can also cause flu-like illness. Therefore, diagnosis based on clinical symptoms can easily lead to misdiagnosis of the disease. Although virus isolation and culture serve as the gold standard for diagnosing influenza viruses,...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/70C12Q1/6844C12N15/11C12R1/93
Inventor 孙宁李晓军王卫萍姚新月陈芳芳杨阳
Owner NANJING GENERAL HOSPITAL NANJING MILLITARY COMMAND P L A
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