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DNA molecular weight standard suitable for brittle X syndrome southern blot hybridization detection

A technology of molecular weight standards and syndromes, applied in the field of molecular biology, can solve problems such as lack of accuracy, difficulty in judging genotype, difficulty in result analysis, etc., and achieve the effect of accurate and rapid judgment

Pending Publication Date: 2020-03-27
GUANGZHOU DARUI BIOTECH
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, if there is no suitable DNA molecular weight standard in the hybridization analysis, it will be difficult to analyze the results
For example, female carriers may have the same degree of separation between two normal alleles of different sizes as the normal allele and the pre-mutation allele, causing the carrier to be misjudged as a normal person; Or for the judgment of the pre-mutation with a small repeat number, if there is no good DNA molecular weight standard, it will be difficult to judge the genotype according to the size of the enzyme fragment
Although the molecular typing standard can be judged internationally through the detection of multiple unknown samples, the molecular typing can be inferred; however, it lacks accuracy, and considering the difficulty of sample collection, biosafety and ethical issues, it needs to be continuously prepared and used in large quantities. It is obviously inappropriate for scientific research and clinical trials
[0006] Now there is a lack of a DNA molecular weight standard with good stability and repeatability, no biological infectivity, and reliable results that can monitor the hybridization effect and accurately type the samples.

Method used

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  • DNA molecular weight standard suitable for brittle X syndrome southern blot hybridization detection
  • DNA molecular weight standard suitable for brittle X syndrome southern blot hybridization detection
  • DNA molecular weight standard suitable for brittle X syndrome southern blot hybridization detection

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0050] The preparation of embodiment 1 DNA molecular weight standard

[0051] 1. Obtain recombinant plasmids of DNA fragments

[0052] Six DNA sequences containing probe sequences were designed and synthesized by Sangon Bioengineering (Shanghai) Co., Ltd. Its sequence nucleotides are as shown in SEQ ID NO: 1~6 (all do not contain the enzyme cutting site of EagI or EcoRI), the southern blot blot blot hybridization that contains on each fragment is combined with the probe sequence of FMR1 gene (its sequence core The nucleotide is shown in SEQ ID NO: 13), Figure 1-6 Probe sequences are shown in bold.

[0053] The synthetic sequence was inserted into the LacZα region of the pEASY-T1 vector.

[0054] The six plasmids were respectively transformed into E. coli strains to obtain six recombinant E. coli strains B28, B29, B33, B52, B53 and B57. Escherichia coli was cultured, and the recombinant plasmids ZM28, ZM29, ZM33, ZM52, ZM53 and ZM57 were extracted respectively.

[0055] 2...

Embodiment 2

[0077] The agarose gel electrophoresis of embodiment 2 DNA molecular weight standard

[0078] 1. Experimental method

[0079] Use the DNA molecular weight standard prepared in Example 1 for southern blot hybridization to perform 1% agarose gel electrophoresis, and the following samples were electrophoresed at the same time: 15000bp DNA ladder (product number: 3582A), 2000bp DNA ladder (product number: 3427A), 200bp DNA ladder (Product No.: 3423A), 1kb DNA ladder (Product No.: 3426A), 5 μL of each of the 4 kinds of ladders were purchased from Baoriji Pharmaceutical Co., Ltd.; Southern blot hybridization DNA molecular weight standard 50 μL. Under the condition of 40V voltage and 2-8℃, run for 26h.

[0080] 2. Experimental results

[0081] Observe the electrophoresis results under gel imaging, and compare the electrophoresis bands of the 6 fragments in the prepared southern blotting hybridization DNA molecular weight standard with the bands of the above 4 kinds of ladders, and ...

Embodiment 3

[0082] Example 3 Southern blot hybridization verification of DNA molecular weight standards

[0083] 1. Experimental method

[0084] Use the DNA molecular weight standard prepared in Example 1 for Southern blot hybridization detection. The specific steps are: prepare 1% agarose gel, add 5 μL of 1 kb DNA ladder, and 15 μL of the DNA molecular weight standard prepared in Example 1. , under 40V voltage, 2~8 ℃ of conditions, electrophoresis 27h; After electrophoresis finishes, carry out denaturation transfer membrane 16~20h, then add southern blot hybridization probe (preparation method is the same as embodiment 1, and its nucleotide sequence is as SEQ ID NO: 16) for overnight hybridization, and finally for chemical color development.

[0085] 2. Experimental results

[0086] The result shows as Figure 8 As shown, the 6 fragment bands in the prepared southern blotting hybridization DNA molecular weight standard were normal in color, and the above fragments were compared with t...

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Abstract

The invention discloses a DNA molecular weight standard suitable for brittle X syndrome southern blot hybridization detection. The DNA molecular weight standard contains six DNA fragments, the lengthsof the six DNA fragments are 2.8 kb, 2.9 kb, 3.3 kb, 5.2 kb, 5.3 kb and 5.7 kb respectively, and all the fragments include fragments capable of being combined with a probe for an FMR1 gene and do notcontain restriction enzyme cutting sites of EagI or EcoRI. The specific DNA molecular weight standard is provided for diagnosis of brittle X syndrome through a southern blot hybridization technology,and accurate and rapid judgment of the type of a clinical detection sample is achieved. The DNA molecular weight standard can still be normally used after being stored for 3 years at the temperatureof minus 20+ / - 5 DEG C, and the detection result is not affected. The DNA molecular weight standard is easy to prepare, has good stability and repeatability in the storage and using process and is free of biological infectivity.

Description

technical field [0001] The invention relates to the technical field of molecular biology, in particular to a DNA molecular weight standard suitable for detection of fragile X syndrome southern blot hybridization. Background technique [0002] Fragile X syndrome (FXS) is a genetic disease characterized by growth retardation and mental retardation. Recent studies have also found that FXS is also an important cause of autism spectrum disorder (ASD). [0003] The incidence of fragile X syndrome is second only to Down syndrome (trisomy 21). According to statistics, the incidence rate of males is about 1:4000, and the incidence rate of females is 1:8000-1:6000. According to conservative estimates, there are at least 200,000 Fragile X patients in my country. The main feature is moderate to severe mental retardation, and the condition tends to worsen with age. Other clinical manifestations are special facial features, such as long faces or protruding ears, which appear after pubert...

Claims

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Application Information

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IPC IPC(8): C12Q1/6883C12Q1/6816C12N15/11
CPCC12Q1/6883C12Q1/6816C12Q2600/166
Inventor 吴英松李明杨旭王文玉孙玉婷杨学习梁志坤
Owner GUANGZHOU DARUI BIOTECH
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