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Salmonella nucleic acid detection plasmid DNA reference sample, preparation method and application thereof

A Salmonella nucleic acid and reference sample technology, applied in the field of microbial detection, can solve the problems of difficult determination and traceability, difficulty in providing traceable quantitative references for multiple targets, insufficient evaluation of detection effects and laboratory results, etc., to achieve a clear sequence source Effect

Pending Publication Date: 2020-10-30
TECH CENT OF GUANGZHOU CUSTOMS
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, there is a lack of positive nucleic acid reference materials for PCR at present.
The simultaneous identification and type analysis of Salmonella often requires the use of multiple genomic reference products, and the value of the target gene in the genomic reference product is difficult to determine and trace. Therefore, the use of genomic DNA as a reference product has the following disadvantages: Difficulty providing traceable quantitative references for multiple targets simultaneously
Therefore, there are serious deficiencies in the detection effect and evaluation of laboratory results.

Method used

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  • Salmonella nucleic acid detection plasmid DNA reference sample, preparation method and application thereof
  • Salmonella nucleic acid detection plasmid DNA reference sample, preparation method and application thereof
  • Salmonella nucleic acid detection plasmid DNA reference sample, preparation method and application thereof

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preparation example Construction

[0036] The preparation of pDNA Salmonella solves the problem of using a variety of genomic nucleic acid reference products when it is necessary to identify the type of Salmonella. At the same time, with the improvement of artificial synthesis technology, plasmid reference products also have great advantages in terms of preparation cost and biological safety.

[0037] In order to evaluate the performance of pDNA Salmonella as a reference product for nucleic acid detection, the present invention confirms that pDNA Salmonella has good stability and uniformity through multiple laboratory joint determination, uniformity and stability experiments. It meets the requirements of "Technical Specifications for Primary Standard Substances". As a reference product for nucleic acid detection, it can provide the basis for the quantification and traceability of Salmonella typhi. The present invention evaluates the feasibility of replacing genomic DNA with pDNA Salmonella, and the results sho...

Embodiment 1

[0039] Synthesis, fragment design and cloning of embodiment 1 plasmid

[0040] 1. Fragment Design

[0041] The sequence is derived from Salmonella aceA (GenBank: U43344.1), SE specific sequence se (GenBank: AF370707.1), ST specific sequence st (GenBank: CP001363.1). The nucleic acid sequence of a single gene can be downloaded from the NCBI website (https: / / www.ncbi.nlm.nih gov / nucleotide)), and the sequence alignment is used to ensure that the selected gene has clear representativeness and universality.

[0042] 2. Plasmid Construction

[0043] The three genes were connected in series at a ratio of 1:1:1 (separated by the unrelated gene fragment aagtcg), and cloned into In pUC57 to form a recombinant plasmid (the length of the chemically synthesized double-stranded DNA fragment is 829bp, the length of the entire plasmid is digested and sequenced to identify the recombinant plasmid, and it is used for further experiments after amplification and purification, such as figure 1...

Embodiment 2

[0048] The mensuration of embodiment 2 homogeneity, fixed value and shelf life

[0049] 1. Judgment of pDNA homogeneity

[0050] Homogeneity is a basic property of reference materials, which is used to describe the spatial distribution characteristics of reference materials. The quality of the plasmid DNA standard substance with good uniformity will not be affected by factors such as aliquoting, so as to ensure the reliability of the test results. In order to meet the requirements of the national standard material technical specification, the present invention uses the ultraviolet method (minimum sampling volume is 1 μ L) to analyze the inter-bottle uniformity and in-bottle uniformity of pNDA, and the data are analyzed by the F test.

[0051] 1) Sampling method for uniformity between bottles: In order to test the homogeneity between bottles, 10 tubes of pDNA were randomly selected, and the 1 μL sample extracted from each tube was repeatedly measured by UV for 3 times, and the...

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Abstract

The invention discloses a salmonella nucleic acid detection plasmid DNA reference sample and a preparation method and application thereof and belongs to the field of microbiological detection. The reference sample is formed by inserting fragments containing salmonella typhimurium specific sequence se, salmonella typhimurium specific sequence st and common aceA genes into plasmids, the genes are connected in series according to a ratio of 1: 1: 1, the genes are separated by irrelevant gene fragments, the reference product contains three clear detection gene segments, i.e. Se, st and aceA, has clear sequence sources, is stored in plasmids in a single copy mode, can be used for qualitative detection, and can also be used as a reference product with traceable quantity values to carry out reagent performance identification and capability evaluation between laboratories.

Description

technical field [0001] The invention relates to the field of microorganism detection, in particular to a salmonella nucleic acid detection plasmid DNA reference sample, a preparation method and an application thereof. Background technique [0002] Salmonella (Sa) belongs to the Enterobacteriaceae family and is a foodborne pathogenic microorganism that threatens the health of humans and animals. It can cause severe diseases such as typhoid, paratyphoid, gastroenteritis, and sepsis. Among the cases of bacterial food poisoning in various countries in the world, the food poisoning caused by it often ranks first or second. Salmonella is very common in everyday life, such as in raw egg shells, poultry, red meat, among other things, contaminated water is a major source of salmonella worldwide. It has been confirmed that about 20 million people in developing countries are infected with Salmonella. Similarly, the United States, Germany and other countries are also frequent places fo...

Claims

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Application Information

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IPC IPC(8): C12Q1/689C12Q1/10C12N15/63C12N15/31C12R1/42
CPCC12Q1/689C12N15/63C07K14/255C12Q2600/166
Inventor 袁慕云许龙岩陈瑶郝文波刘二龙
Owner TECH CENT OF GUANGZHOU CUSTOMS
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