Primer and probe sequence for detecting dengue virus 3 nucleotides fragment

A dengue virus and primer sequence technology, applied in biochemical equipment and methods, DNA/RNA fragments, microbial determination/inspection, etc., can solve problems such as low sensitivity, time-consuming experiments, cumbersome operations, etc.

Inactive Publication Date: 2008-03-12
TAITAI GENOMICS +1
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Problems solved by technology

[0003] The laboratory diagnosis of dengue virus has established a complete set of mature technologies at home and abroad. The traditional methods mainly include hemagglutination inhibition test, complement fixation test, neutralization test, etc., and these methods have low sensitivity to varying degrees. , poor specificity, cumbersome operation, time-consuming and other deficiencies, especially difficult to accurately type
With the successful development of dengue virus monoclonal antibodies, the typing and identification methods based on dengue virus type-specific monoclonal antibodies, such as indirect immunofluorescence (IFA) and enzyme-linked immunosorbent

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  • Primer and probe sequence for detecting dengue virus 3 nucleotides fragment

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Embodiment Construction

[0011] 1. Design of primers and probes: Through comparative analysis of all known dengue virus type III genome sequences, select a segment with no secondary structure and a high degree of conservation, and design multiple pairs of primers and probes. The length of the primers is generally About 20 bases, there is no complementary sequence between the primers and within the primers. The optimal primer and probe sequence combinations are as follows:

[0012] Upstream primer DenIIIpf: GGAAAACCGTCTATCAATATGCTG

[0013] Downstream primer DenIIIpr: TCCTCTTGAGAATCTCTTCGCC

[0014] Probe DenIIIpb: CGCGTGAGAAACCGTGTGTCAACTG

[0015] 2. Establishment and optimization of the reaction system: use the inactivated dengue virus type III as the sample to be tested, use the extraction method of TriIIIzol nucleic acid extraction reagent to extract the viral genome RNA, and store it at -20°C for later use.

[0016] 2.1 Optimization of primer concentration In the case of the same other conditi...

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Abstract

The invention provides a PCR expansion primer and probe sequence for a dengue virus type III nucleotide section. The primer sequence comprises a primer pair comprising an upstream primer DenIIIpf of sequence GGAAAACCGTCTATCAATATGCTG and a downstream primer Den IIIpr of sequence TCCTCTTGAGAATCTCTTCGCC. The probe DenIIIpb is of sequence CGCGTGAGAAACCGTGTGTCAACTG.

Description

technical field [0001] The invention relates to a primer and a probe sequence for detecting dengue virus type III nucleotide fragments. Background technique [0002] Dengue virus (dengue virus, DEN) is a single-stranded positive-sense RNA virus of the Flavivirus genus. According to the antigenicity of the E protein, it is divided into four serotypes: type I, type II, type III and type IV. Dengue virus is transmitted by Aedes aegypti and Aedes albopictus, causing dengue fever (DF) and dengue hemorrhagi fever / dengue shock syndrome (DHF / DSS) ). There are 100,000,000 people infected with dengue virus in the tropics and subtropical regions of the world every year, among which the Southeast Asia bordering my country is the most prevalent (WHO.1998). In the 20th century, dengue fever has had many pandemics around the world, with millions of cases, and it has been endemic in Southeast Asia. In 1978, an epidemic occurred in Guangdong, my country, and dengue virus type IV was isola...

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Application Information

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IPC IPC(8): C12Q1/70C12Q1/68C12N15/11
CPCY02A50/30
Inventor 肖性龙吴新伟张经纬狄飚伍业健
Owner TAITAI GENOMICS
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