Nucleotide sequence, molecular probe and method for discriminating paphiopedilum micranthum
A technology of nucleotide sequence and P. sclera, applied in biochemical equipment and methods, determination/inspection of microorganisms, DNA/RNA fragments, etc. Simple, low sample volume, short time effect
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[0026] Example 1: Preparation of specific nucleotide sequence of Paphiopedilum sclerophylla
[0027] 1. Genomic DNA extraction
[0028] Cut 0.2 g of Paphiopedilum leaves stored at -80°C into a mortar, immediately add liquid nitrogen to grind to powder, and then use UNIQ-10 column plant genomic DNA extraction kit from Shanghai Shenggong Bioengineering Co., Ltd. The genomic DNA of Paphiopedilum is electrophoresed with 1% agarose gel, and the DNA concentration is detected with an ultraviolet spectrophotometer, diluted to 50ng / μl.
[0029] 2. SCoT-PCR reaction and electrophoresis detection
[0030] Use SCoT universal primer 2 (5’-CAACAATGGCTACCACCC-3’) for PCR amplification, the amplification system is: 2μl 10×Buffer, 2μl MgCl 2 (25mM), 0.8μl dNTPs (10mM), 1μl SCoT primer 2 (10μM), 1μl template DNA (50ng / μl), 0.5μl Taq enzyme (2U / μl), 12.7μl ddH 2 O. The total volume is 20μl.
[0031] The PCR program was: 94°C pre-denaturation 4 min; 35 cycles (94°C denaturation 45 s, 50°C annealing 45 ...
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[0035] Example 2: Preparation of YYF / YYR specific nucleotide probe for Paphiopedilum sclerophylla, PCR reaction and electrophoresis detection
[0036] On the basis of obtaining the specific nucleotide sequence of Paphiopedilum sclerophylla, the YYF / YYR nucleotide sequence (shown in SEQ ID NO.2 and SEQ ID NO.3 respectively) was designed using Primer Primer 5.0 software. , The primers were synthesized by Shanghai Shenggong Biological Engineering Co., Ltd. Then use the designed and synthesized primers YYF / YYR to perform amplification detection on different Paphiopedilum samples (see the description of the figure for details).
[0037] PCR amplification system is 2μl 10×Buffer, 2μl MgCl 2 (25mM), 0.8μl dNTPs (10mM), 1μl primer YYF (10μM), 1μl primer YYR (10μM), 1μl template DNA (50ng / μl), 0.5μl Taq enzyme (2U / μl), 11.7μl ddH 2 O. The total volume is 20μl.
[0038] The reaction program is 94°C pre-denaturation for 4 min; 35 cycles (94°C denaturation for 45 s, 57°C annealing for 45 s, 7...
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