Gene chip and detection method for detecting FMDV, VSV, SVDV, PPRV and BTV
A gene chip and chip technology, which is applied in the field of biochips, can solve the problems that cannot fully meet the requirements of fast, accurate and high-throughput detection of imported animal diseases, increase the difficulty of pathogen diagnosis and instability, and achieve stability and save time and effort. , The hybridization signal is stable and the stability is strong
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Embodiment 1
[0075] Example 1, the present invention is based on cell proliferation of foot-and-mouth disease virus, vesicular stomatitis virus, porcine vesicular disease virus, Peste des Petits Ruminants virus and bluetongue virus, and extracts virus genomes. Select different specific conserved sequences to design 8 oligonucleotide probes, which can specifically bind to the corresponding viral cDNA PCR products. When performing genome amplification by PCR, the 5′ end of the universal upstream primer is labeled with Cy3 fluorescent dye , the probe can hybridize with this product at 50°C. According to the position and intensity of the fluorescent signal, the hybridization result is judged to identify foot-and-mouth disease virus, vesicular stomatitis virus, porcine vesicular disease virus, Peste des Petits Ruminants virus and bluetongue disease virus. PCR primers SEQ ID NO.11, SEQ ID NO. 12. SEQ ID NO.13, SEQ ID NO.14, SEQ ID NO.15, SEQ ID NO.16, SEQ ID NO.17, SEQ ID NO.18, SEQ ID NO.19, S...
Embodiment 2
[0097] Example 2, see figure 1 , the gene chip used for the detection of foot-and-mouth disease virus, vesicular stomatitis virus, porcine vesicular disease virus, Peste des petits ruminants virus and bluetongue virus, adopts the gene chip micro-spotting technology, and combines the probes of the samples to be tested with various quality control The probes were immobilized on the chemically modified aldehyde substrate to form a microarray of 7 rows×8 columns. The distribution of probes on the microarray from top to bottom is as follows: spotting position quality control partition P1: 1 row × 8 points, hybridization positive quality control partition P2: 1 row × 4 points, foot-and-mouth disease virus type A detection probe partition 1: 1 line × 4 points, FMD virus Asian type detection probe division 2: 1 line × 4 points, FMD virus general detection probe division 3: 1 line × 4 points, FMD virus O-type detection probe division 4: 1 line ×4 points, vesicular stomatitis virus det...
Embodiment 3
[0100] Embodiment 3, reagent preparation
[0101] 1) Chip washing solution
[0102] According to needs and actual conditions, prepare washing solution I and washing solution II according to the following proportions.
[0103] Washing solution Ⅰ: the final concentration of SSC is 2×, and the final concentration of SDS is 0.2%. For example, 500mL lotion I = 440mL distilled water + 50mL 20×SSC + 10mL 10% SDS, or prepare in proportion as required.
[0104] Washing solution Ⅱ: The final concentration of SSC is 0.2×. Such as 500mL lotion II = 495mL distilled water + 5mL 20 × SSC, or according to the need to prepare in proportion.
[0105] If 10% SDS produces white flocculent precipitates, please dissolve and mix in a 42°C water bath to prepare a lotion.
[0106] 2) absolute ethanol.
[0107] 3) Ice-water mixture.
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