A kind of test kit for Staphylococcus wauserii detection
A technology of Staphylococcus wornerii and a kit, which is applied in the field of kits for the detection of Staphylococcus wornerii, can solve the problems of high cost, delay in disease treatment, lack of specific primers, etc., and achieves high specificity and low equipment requirements. Effect
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Embodiment 1
[0016] Embodiment 1: Staphylococcus rpoB gene sequence alignment
[0017] Such as figure 1 As shown, in the rpoB gene sequence of Staphylococcus wattlerii, the 5' end of the guide RNA sequence (selected part) of the present invention is the PAM structure of TTTN. The guide RNA sequence does not have a completely consistent sequence among Staphylococcus aureus, Staphylococcus human, Staphylococcus epidermidis, Staphylococcus capitum, and Staphylococcus hemolyticus, and all have several base differences. Moreover, there is no PAM structure of TTTN at the 5' end of the homologous sequence in Staphylococcus aureus, Staphylococcus human, Staphylococcus epidermidis, Staphylococcus capitum, and Staphylococcus hemolyticus. Therefore, the Cas12a protein cannot be targeted by using this guide RNA. To Staphylococcus aureus, Staphylococcus hominis, Staphylococcus epidermidis, Staphylococcus capitis, Staphylococcus hemolyticus, therefore, only Staphylococcus worsii can show a positive rea...
Embodiment 2
[0018] Embodiment 2: The guide RNA specificity determination of the present invention, the steps are as follows:
[0019] (1) Prepare standard strains of Staphylococcus worthii, Staphylococcus aureus, Staphylococcus hominis, Staphylococcus epidermidis, Staphylococcus capitis, Staphylococcus hemolyticus;
[0020] (2) Take 1ml of the sample to be tested, heat it at 98 degrees Celsius for 5min, and draw 1μl as the test sample;
[0021] (3) Prepare the reaction system, the reaction system is 25 μl, including 1 μl detection sample, 14.75 μl hydrated TwistAmpbasic kit reaction drying ball (TwistDx company), 0.9 μl 10mM RPA-F (sequence is SEQ No.2) and RPA-R ( Sequence is SEQ No.3), 0.375 μ l Ribonuclease Inhibitor (Takara Company), 3.5 μ l buffer2.1 (NEB Company), 1000 nM guide RNA (sequence is SEQ No.1), 250 nM Cas12a (NEB Company), 200 nM single-stranded DNA Probe (Shanghai Sangong), add water to make up to 25μl;
[0022] (4) React at a constant temperature of 37 degrees Celsius...
Embodiment 3
[0025] Embodiment 3: the detection method based on guide RNA described in the present invention and traditional PCR method specificity and experimental time-consuming comparison
[0026] 1. based on the detection method of guide RNA described in the present invention, the steps are as follows:
[0027] (1) Prepare standard strains of Staphylococcus worthii, Staphylococcus aureus, Staphylococcus hominis, Staphylococcus epidermidis, Staphylococcus capitis, Staphylococcus hemolyticus;
[0028] (2) Take 1ml of the sample to be tested, heat it at 98 degrees Celsius for 5min, and draw 1μl as the test sample;
[0029] (3) Prepare the reaction system, the reaction system is 25 μl, including 1 μl detection sample, 14.75 μl hydrated TwistAmpbasic kit reaction drying ball (TwistDx company), 0.9 μl 10mM RPA-F (sequence is SEQ No.2) and RPA-R ( Sequence is SEQ No.3), 0.375 μ l Ribonuclease Inhibitor (Takara Company), 3.5 μ l buffer2.1 (NEB Company), 1000 nM guide RNA (sequence is SEQ No.1...
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