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Application of SNEP1 protein in diagnosis of colorectal cancer

A colorectal cancer and protein technology, applied in the application field of SNEP1 protein in the diagnosis of colorectal cancer, can solve the problems of no collection, no functional description, etc.

Active Publication Date: 2020-06-12
NANCHANG UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

There are currently no relevant functional documents on SNEP1(C18orf56) protein included in the Pubmed database
In Genbank, Uniprot and other gene and protein databases, there is no functional description of SNEP1 (C18orf56) protein

Method used

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  • Application of SNEP1 protein in diagnosis of colorectal cancer
  • Application of SNEP1 protein in diagnosis of colorectal cancer
  • Application of SNEP1 protein in diagnosis of colorectal cancer

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0027] Example 1: Plate cloning method to detect the effect of SNEP1 on the proliferation ability of tumor cells

[0028] Take SNEP1 overexpression or silencing stable tumor cells or control tumor cells in the logarithmic growth phase, remove the medium, add trypsin to fully digest for 2-3min, then add 500 μl DMEM high-glucose medium containing 10% serum to neutralize the trypsin, Mix the cells by pipetting to separate the cells into single cells. Seed 1000 cells / well into a 6-well plate and disperse the cells evenly. Place at 37°C, 5% CO 2 Culture in the incubator for 14-20 days. Culture was terminated when macroscopic colonies were observed. Remove the medium, add 4% paraformaldehyde solution and fix at 37°C for 10min. After removing the fixative, wash with PBS 3 times, add 0.2% crystal violet and stain for 20-30min. The staining solution was washed away with PBS several times until the PBS was clear and then air-dried. Place the 6-well plate upside down on a professio...

Embodiment 2

[0029] Example 2: Immunohistochemical detection of SNEP1 expression in cancer tissue and normal tissue

[0030] The resected tissue samples were placed in a sterile tray, and tissue scissors and scalpels were used to collect the tissue pieces, and the tissue blocks were fixed in 10% neutral formalin for 48 hours. The fixed tissue block was trimmed slightly, put in the embedding box, passed through 30%, 50%, 70%, 80%, 90%, 95%, 100% ethanol solution and xylene I, xylene II in sequence, Finally, paraffin I and paraffin II were added to dehydrate the tissue gradient. Then start the paraffin embedding machine to embed the tissue block. Use a paraffin trimmer to cut the tissue block into 3 μm / slice slices, hang the slices on a glass slide, spread them out, and place them on a 65°C oven for 30 minutes. After the paraffin sections were baked in a 70°C oven for 90 minutes, they were dewaxed and hydrated by xylene I, xylene II, and 100%, 95%, and 85% ethanol solutions in sequence. T...

Embodiment 3

[0031] Example 3: Western blot detection of SNEP1 expression in cancer tissue and normal tissue Prepare crushed ice, weigh and mark the 5ml centrifuge tube, and pre-cool it on ice with PBS; Cup transfer, cut part of the tissue, put it into a pre-cooled centrifuge tube, put the remaining tissue back into the cryovial, and put it back to the original place; weigh the tissue and record; wash the tissue with pre-cooled PBS 2-3 times, wash De-adhered blood; cut up the tissue, add RIPA buffer containing 1:100 protease inhibitor and 1mMPMSF, add the ratio tissue: buffer=1:10 (g / ml); homogenize the tissue on a tissue disruptor, 13000g, 10s until the tissue was minced; the tissue should be kept on ice at all times; on a rotator, rotate at 4°C for 30 minutes to fully lyse the tissue; transfer the lysate to an EP tube, centrifuge at 4°C, 12000g, 15min; take the supernatant, Obtain the required tissue protein lysate; take 100 μl of protein for quantification and do WB, and store the rest ...

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Abstract

A SNEP1 protein or a nucleic acid sequence thereof can be used for preparing a reagent or a kit for diagnosing colorectal cancer. An anti-SNEP1 protein specific antibody or an SNEP1 protein specific nucleic acid probe is used as a colorectal cancer diagnostic reagent to react with a cell sample; the binding amount of the antibody or the probe is obtained by detecting the detectable group coupled with the probe or the antibody, and compared with the binding amount of normal cells, the primary diagnosis can be conveniently carried out on the condition of a patient.

Description

technical field [0001] The invention relates to the field of molecular biology, especially gene diagnosis, especially the application of SNEP1 protein in the diagnosis of colorectal cancer. Background technique [0002] With the change of human living environment, living standard and lifestyle, malignant tumor has become one of the major diseases that are increasingly common and seriously threaten human life and quality of life. There are more than 14 million new cases of cancer every year in the world, among which lung cancer and breast cancer are more common; 8.2 million people die of cancer worldwide every year, and the most common cause of death is lung cancer. The map of cancer incidence shows that although the incidence of cancer in my country is at the middle level in the world, at 2.8%, the mortality rate is at the upper middle level at 27%. Globocan predicts global cancer incidence and death. By 2020, it is estimated that about 17.14 million people will suffer from...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6886G01N33/574
CPCC12Q1/6886G01N33/57419G01N33/57484C12Q2600/158C12Q2600/118G01N2333/47
Inventor 罗时文程敏章颜正伟胡国辉
Owner NANCHANG UNIV