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Polypeptiomics identification method based on Bayesian evaluation and sequence library searching and application thereof

An identification method and sequence technology, applied in the field of protein secondary mass spectrometry identification, can solve the problems of short peptide identification results, time-consuming, inability to identify short peptides, etc., and achieve the effect of reducing workload, improving efficiency, and improving identification efficiency.

Active Publication Date: 2022-06-17
WUYI UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Among them, Mascot cannot identify short peptides with a length of less than 6; Maxquant takes a very long time to identify peptides of non-specific enzymatic hydrolysis products, which can last for several months; due to its own limitations, Sequest cannot identify short peptides with a length of less than 4. And there are few short peptide identification results available for screening analysis

Method used

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  • Polypeptiomics identification method based on Bayesian evaluation and sequence library searching and application thereof
  • Polypeptiomics identification method based on Bayesian evaluation and sequence library searching and application thereof
  • Polypeptiomics identification method based on Bayesian evaluation and sequence library searching and application thereof

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Embodiment 1

[0133] The analysis object is the mass spectrometry detection data collected by the high-resolution liquid-mass spectrometer to detect the glutathione standard (amino acid sequence: ECG). The analysis method is the same as the above-mentioned embodiment. The specific detection parameters are set as follows:

[0134] The protein sequence library is the soybean protein sequence library (downloaded from UniProt, searched for the keyword "soybean"). In step (2), the preset residue fragment length range is 1-3; in step (4), the threshold value of the response intensity of the primary precursor ion signal is 1000; in step (5), the threshold value of the coverage ratio of the secondary product ion is 1000. 70%; in step (6), the enzyme used in the simulated enzymatic hydrolysis is Alcalase broad-spectrum alkaline protease, and there is no restriction on the restriction site, and the preset length range of the polypeptide fragment to be retrieved is 2-10; step (8) Among them, the pri...

Embodiment 2

[0136] The object of analysis is the mass spectrometry detection data collected by high-resolution liquid-mass spectrometry to detect the enzymatic hydrolysis products of soybean protein (soybean protein is provided by Linyi Shansong Biological Products Co., Ltd., and the enzyme used is Alcalase broad-spectrum alkaline protease). . The analysis method is the same as the above-mentioned embodiment. The specific detection parameters are set as follows:

[0137] The protein sequence library is the soybean protein sequence library (downloaded from UniProt, searched for the keyword "soybean"). In step (2), the preset residue fragment length range is 1-3; in step (4), the threshold value of the response intensity of the primary precursor ion signal is 1000; in step (5), the threshold value of the coverage ratio of the secondary product ion is 1000. 30%; in step (6), the enzyme used in the simulated enzymatic hydrolysis is Alcalase broad-spectrum alkaline protease, and there is no ...

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Abstract

The invention discloses a polypeptiomics identification method based on Bayesian evaluation and sequence library searching. The method comprises the following steps: carrying out ion standardization on each ion in mass spectrometric detection data of a sample, and filtering; and establishing a to-be-retrieved polypeptide sequence library one by one for to-be-retrieved sequences in the protein sequence library to which the sample belongs, identifying the sequences in the to-be-retrieved polypeptide sequence library one by one to obtain candidate identification polypeptides, and scoring the candidate identification polypeptides to obtain an identification result. The polypeptiomics identification method is simple and high in identification efficiency, greatly reduces the requirements of the analysis process on computer hardware, is beneficial for realizing multi-core parallel processing of a computer, can simultaneously provide a plurality of candidate identification polypeptides for analysts to select, and is suitable for popularization and application. The method is suitable for analyzing polypeptidomics results of food protein enzymolysis products, biomedical samples (such as blood, body fluid and the like) and the like.

Description

technical field [0001] The invention relates to the field of protein secondary mass spectrometry identification, in particular to a peptidomics identification method based on Bayesian evaluation and sequence search and its application. Background technique [0002] Bioactive peptides are favored by researchers, manufacturers and consumers because of their outstanding safety, nutritional and functional properties. At present, a large number of functional peptide products have emerged on the market, such as uric acid-lowering peptides, memory-improving peptides, elastin peptides, soybean peptides, etc., which are loved and sought after by consumers. However, most of these polypeptide products are the enzymatic hydrolysis products of food-derived proteins, which are complex mixtures composed of thousands of polypeptides, rather than a single polypeptide. [0003] Because most food-derived proteases have a wide range of action sites, the proportion of short peptides in the enzy...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): G16B30/10G16B50/00G01N33/68
CPCG16B30/10G16B50/00G01N33/6848
Inventor 徐巨才刘万顺陈雅君梁姚顺严嘉慧郭素琴黄峻洪范丽琪黄其丽
Owner WUYI UNIV
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