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Marine actinomycete taxon for drug and fermentation product discovery

a technology of marine actinomycete and drug discovery, applied in the field of marine actinomycete taxon for drug and fermentation product discovery, can solve the problems of low utility of marine actinomycete as source of novel industrial products, and low yield of novel products

Inactive Publication Date: 2006-01-12
RGT UNIV OF CALIFORNIA
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

[0007] The invention is the discovery, isolation and characterization of the first major obligate marine actinomycete taxon for which the name Salinospora gen. nov. is proposed. Members of this genus are readily recognized by a series of characteristic features including:

Problems solved by technology

Although many useful substances have been discovered from soil actinomycetes over the last 60 years, the yield of novel products has drastically decreased as common soil species continually yield previously discovered metabolites.
These types of studies have led to the general belief that marine actinomycetes are not significantly different from those on land and therefore of little utility as a source of novel industrial products.

Method used

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  • Marine actinomycete taxon for drug and fermentation product discovery
  • Marine actinomycete taxon for drug and fermentation product discovery
  • Marine actinomycete taxon for drug and fermentation product discovery

Examples

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example 1

[0039] Sample collection and bacterial isolation. Samples of the top 1 cm of sediment were collected by SCUBA and processed by either stamping, dilution and heat-shock or both methods. Dilution and heat-shock was carried out as follows: 1 ml of wet sediment was added to 4 ml of sterile seawater, heated for six minutes at 55° C., shaken vigorously, and dilutions of 10″2 to 10″4 were inoculated onto agar media (M1-M4). For stamping, 10 ml of wet sediment were aseptically placed into a sterile aluminum dish, dried (ca. 24 hours) in a laminar flow hood, ground lightly with a pestle, pressed into a sterile foam plug (14 mm in diameter) and inoculated onto agar media (M1-M4) by stamping 8-9 times in a clockwise fashion giving a serial dilution effect. All isolation media were prepared with 100% filtered natural seawater. Actinomycetes generally appeared after 4-6 weeks of incubation at 25-28° C. and were considered as any colony with a tough leathery texture, dry or folded appearance and ...

example 2

[0041] DNA purification, amplification, sequencing and phylogenetic analyses. Genomic DNA was prepared as follows: 10 mg of vegetative mycelia grown on M1 agar for 2-4 weeks at 25-28° C. was macerated and an aqueous cleared lysate, created by standard methods, was precipitated with 0.7 volumes of isopropanol. The resultant DNA pellet was then washed with 70% ethanol and resuspended in 10 mM Tris buffer (pH 8.5) to a final concentration of 100 ng / ml. 16S rDNA sequencing templates were amplified from 10-50 ng of genomic DNA template by the PCR using the primers FC27 (51 AGAGTTTGATCCTGGCTCAG) (SEQ ID 1) and RC1492 (5′ TACGGCTACCTTGTTACGACTT) (SEQ ID 2). PCR products were purified with a Qiagen QIAquick PCR clean-up kit using the manufacture's protocols. Partial sequences of morphologically diverse strains were obtained from nucleotides 80-480 (E. coli numbering system) using the FC27 primer. Select 16S rDNA amplicons were sequenced almost in their entirety on both top and bottom strand...

example 3

[0042] Genetic-analysis by Repetitive Extragenic Palindromic Polymerase Chain Reaction (REP-PCR). The genetic diversity of Salinospora strains was analyzed using REP-PCR (Versalovic et al., 1991). This technique, when applied to the Salinospora group, involves the use of total genomic DNA as a template and PCR primers specific for repetitive sequences present in the genomes of high G+C content Gram-positive bacteria. The length of the PCR products for any one strain will vary with the position of the repetitive sequences in the genome and result in a population of amplicons of various lengths that when separated on an agarose gel create strain-specific banding patterns. This high throughput method allows for the detection of genetically distinct strains and is more sensitive than 16S rRNA gene analyses as a method to assess genetic diversity. REP-PCR banding patterns are used to sort strains into distinct groups that can produce different gene products. Grouping of strains based on ...

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Abstract

The invention is the discovery of an actinomycete genus, given the name Salinospora gen. nov., that displays an obligate requirement of seawater (Na+) for growth and unique 16S rRNA signature nucleotides. The invention is also the use of the genus for the production and discovery of active biomolecules such as pharmaceutical agents, agrichemicals, immunomodifiers, enzymes and enzyme inhibitors.

Description

CROSS-REFERENCES TO RELATED APPLICATIONS [0001] This application claims the benefit of priority of U.S. provisional application Ser. No. 60 / 249,356 filed Nov. 16, 2000 which is incorporated herein by reference in its entirety.FIELD OF THE INVENTION [0002] The invention relates to the discovery of a novel taxon of marine bacteria of the order Actinomycetales and the use of this taxon for the discovery and production of proteins, secondary metabolites and biomolecules for use as pharmaceutical compositions, agrichemicals, immunomodifiers, enzymes and enzyme inhibitors. BACKGROUND OF THE INVENTION [0003] Microorganisms belonging to the class Actinobacteria, commonly called actinomycetes, reside taxonomically within the Gram-positive bacteria and are ubiquitous in terrestrial environments. Actinomycetes are a prolific source of diverse biologically active metabolites. They have been a source of a numerous useful products including Pharmaceuticals, agrichemicals, low molecular weight enz...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): G01N33/53C12N1/20G01N33/50C12N1/10C12N15/09C12P17/10C12P17/18C12Q1/04G01N33/15
CPCC12N1/10C12P17/188G01N2333/36C12R1/01C12Q1/18A61P35/00C12N1/205C12R2001/01
Inventor FENICAL, WILLIAMJENSEN, PAULMINCER, TRACY
Owner RGT UNIV OF CALIFORNIA
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