One-step reduction and alkylation of proteins

a protein and alkylation technology, applied in the field of analysis of proteins, can solve the problems of time-consuming, opportunity to lose all or a portion of the protein sample, and achieve the effects of reducing the amount of time involved

Inactive Publication Date: 2006-07-27
INDIANA PROTEOMICS CONSORTIUM
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

[0005] Common prior art reducing agents used to reduce proteins include dithiothrediol (DTT) and tricarboxyethylphosphene, neither of which are volatile under a partial vacuum at around room temperature. One method of reducing a protein involves incubating the protein with one of a reducing agent followed by three washing steps. After the reducing step, the protein is then incubated with an alkylating agent such as iodoacetamide or iodoacetic acid, after which the sample is then again subjected to multiple washing steps. Iodoacetamide and iodoacetic acid are also not volatile under a partial vacuum at about room temperature. Although the method for reducing and alkylating proteins described above is common, it is tedious, time consuming, and provides multiple opportunities to lose all or a portion of the protein sample, especially when small samples are involved. The present invention is directed to decrease the amount of time involved in the reduction and alkylation of protein samples and reduce the risk of losing all or a portion of the protein sample.

Problems solved by technology

Although the method for reducing and alkylating proteins described above is common, it is tedious, time consuming, and provides multiple opportunities to lose all or a portion of the protein sample, especially when small samples are involved.

Method used

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  • One-step reduction and alkylation of proteins
  • One-step reduction and alkylation of proteins
  • One-step reduction and alkylation of proteins

Examples

Experimental program
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Effect test

example 1

[0035] A purified lysozyme protein (having a mass of 14299.9 obtained by MALDI MS) in aqueous solution was adjusted to pH 10 with 0.1 M ammonium carbonate. An equal volume of the present reagent comprising 0.5% triethylphosphine, 2% iodoethanol and 97.5% acetonitrile was added to the protein solution. The protein / reagent mixture was capped and incubated at 37° C. for one hour and then uncapped and subjected to a vacuum for about an hour to produce a dried pellet in the container. The dried pellet was reconstituted in the same container to the original volume with a trypsin solution. The reconstituted protein was determined by MALDI MS to have a mass of 14650.9, a difference of 351, which corresponds to the addition of a 44 Da ethanol to each of the eight cysteines in the reduced and alkylated lysozyme.

example 2

[0036] The procedure of Example 1 was repeated with BSA substituted lysozyme. The BSA showed a gain in mass of 1539, which corresponds to a 44 Da alkylation for each of the 35 cysteines in BSA indicating the reduction and alkylation were successful.

example 3

[0037] An unfractionated serum sample was dried under vacuum. The resulting protein pellet was then redissolved in the same container with a volume of 8 M urea, and 0.1 M ammonium carbonate (pH 10) equal to the original volume of the serum sample in order to denature the proteins and maintain their solubility. An equal volume of the present reagent comprising 0.5% triethylphosphine, 2% iodoethanol and 97.5% acetonitrile was added to the protein solution. The protein / reagent mixture was capped and incubated at 37° C. for one hour and then uncapped and subjected to a vacuum for about an hour to produce a dried pellet in the container. The dried pellet was reconstituted in the same container with five times the original volume of a trypsin solution. The sites of alkylation were verified by subjecting the reconstituted material to LC / MS / MS analysis following incubation with trypsin. Sequence coverage as high as 90% has been observed by mass spectral analysis following trypsin digestion....

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Abstract

The present invention relates generally to the field of analyzing proteins and more specifically to the reduction and alkylation of protein samples during protein analysis. A novel composition and method for reducing and alkylating proteins is disclosed. A novel reagent including a combination of a volatile reducing agent, a volatile alkylating agent, and a volatile solvent is used for a one-step reduction and alkylation of proteins allowing the protein sample to remain in the same container during the reduction and alkylation processes.

Description

RELATED APPLICATIONS [0001] This application is a continuation-in-part application of U.S. application Ser. No. 10 / 654,062.FIELD OF THE INVENTION [0002] The invention relates generally to the field of analyzing proteins and more specifically to the reduction and alkylation of protein samples during protein analysis. BACKGROUND AND SUMMARY OF THE INVENTION [0003] Many proteins such as lysozyme are formed from folded polypeptides which are held in place by disulfide bonds that link the folds. Analysis of proteins often involves restriction or cutting apart of the polypeptides by enzymes, such as trypsin, at specific locations of the protein. After the protein has been cut apart, specific sites on the protein can be studied. Sometimes, the specific locations where the enzyme is to cut apart the protein is inaccessible to the enzyme because of the folding. [0004] One method for unfolding the polypeptides is to reduce the disulfide bonds linking the folded polypeptides. Reduction is acco...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): C07K14/00C12N9/36
CPCC07K14/00C12N9/2462
Inventor HALE, JOHNKNIERMAN, MICHAEL
Owner INDIANA PROTEOMICS CONSORTIUM
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