Looking for breakthrough ideas for innovation challenges? Try Patsnap Eureka!

Substantially pure reverse transcriptases and methods of production thereof

a reverse transcriptase, substantial technology, applied in the field of molecular biology, protein chemistry and protein purification, can solve the problems of large production-scale preparations, large batch sizes, and distinct disadvantages of methods, so as to prevent the contamination of enzymes, and prevent the release of nucleic acids

Inactive Publication Date: 2009-01-29
INVITROGEN
View PDF2 Cites 0 Cited by
  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

"The present invention provides methods for producing reverse transcriptases that are free from contamination by nucleic acids and other unwanted materials. These reverse transcriptases can be used in various applications such as synthesis, amplification, and sequencing of nucleic acids. The invention also provides compositions comprising these reverse transcriptases. The invention is based on the discovery that certain techniques for disrupting bacterial cells can lead to the release of intracellular proteins, which can then be purified and used for various applications. The invention provides methods for disrupting bacterial cells using chemical and physical methods, as well as combinations of both. The invention also includes the use of detergents and proteins or protamines to enhance the effect of the treatment. Overall, the invention provides a way to produce high-quality reverse transcriptases for various applications."

Problems solved by technology

However, these methods possess distinct disadvantages as well.
This need for centrifugation limits the batch size capable of being processed in a single preparation to that of available centrifuge space; thus, large production-scale preparations are impracticable if not impossible.
Furthermore, physical methods, and many chemical techniques, typically result in the release from the cells not only of the desired intracellular proteins, but also of undesired nucleic acids and membrane lipids (the latter particularly resulting when organic solvents are used).
These undesirable cellular components also complicate the subsequent processes for purification of the desired proteins, as they increase the viscosity of the extracts (Sambrook, J., et al., in: Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory Press (1989), pp.
One problem associated with these approaches is that the enzyme preparations are typically contaminated with nucleic acids (e.g., RNA and DNA).
Since reverse transcriptase enzymes are routinely used in techniques of amplification and synthesis of nucleic acid molecules (e.g., the Polymerase Chain Reaction (PCR), particularly RT-PCR) the presence of contaminating DNA or RNA in the enzyme preparations is a significant problem since it can give rise to spurious amplification or synthesis results.

Method used

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
View more

Examples

Experimental program
Comparison scheme
Effect test

example 1

Permeabilization of Bacterial Cells

[0044]In the initial steps of the purification process, 20 kg bacterial cells (E. coli, N4830 (pRT601) (see U.S. Pat. No. 5,017,492; ATCC deposit no. 67007) containing the expression vector for MMLV-RT which were obtained directly from actively growing cultures were suspended at 250 g of cells / L into cold (4° C.) permeabilization buffer (100 mM BisTRIS, 5.0% Triton X-100, 2.0% sodium deoxycholic acid, 10 mM EDTA, 1 mM dithiothreitol (DTT), pH 7.0.

[0045]During suspension of the cells in the buffer, phenylmethylsulfonylfluoride (PMSF) was added to a final concentration of 1.0 mM. Cells were stirred for about 45 minutes at 4° C. to ensure complete suspension, and then ammonium sulfate was added to a final concentration of 300 mM and the cell suspension was stirred for an additional 45 minutes. During this time, cells were permeabilized via the action of the deoxycholic acid and Triton X-100, and intracellular protein release into the buffer was enhanc...

example 2

Microfiltration, Concentration and Diafiltration of Extracts

[0046]Microfiltration of the suspension was then carried out through 120 ft2 0.2 μm Microgon mixed ester cellulose hollow fiber system, using a recirculation rate of 120 L / min. The suspension was diafiltered with five to six volumes of cold filtration buffer, collecting the permeate in a suitable sized chilled (4° C.) container. Under these conditions, recombinant enzymes passed through the membrane with the permeate, leaving the bacterial cells in the retentate.

[0047]As the ultrafiltration proceeded, concentration of the permeate was begun once a sufficient volume had been collected to prime the second ultrafiltration system. Permeate was concentrated using an Amicon DC-90 system, through an AG technologies 10,000 MWCO membrane (although alternative membrane systems of 10,000 MWCO, such as a Filtron system, a Millipore plate and frame system, or a membrane from Microgon may be also used) and an in-line chiller to minimize ...

example 3

Purification and Characterization of DNA-Free Enzyme

[0048]Purification of the enzyme from the ultrafiltrate was accomplished by a series of chromatographic steps, using a procedure modified slightly from that described for purification of T5 DNA polymerase from E. coli (Hughes, A. J., Jr., et al., J. Cell Biochem. Suppl. 0 16 (Part B):84 (1992)).

A. Macroprep High S

[0049]The filtrate was mixed with 9 L Whatman DE-52 and then was polish filtered through two CUNO 8ZP 10 A depth filters. In the first chromatographic step, the ultrafiltrate was applied to a 9 L BioRad Macroprep High S. The column was then washed with 10 volumes of 20 mM TRIS, 150 mM NaCl, 0.1 mM EDTA, 10% glycerol, 0.01% Triton X-100, 1 mM DTT, pH 8.0 at 4.0° C. run at a flow rate of about 20 cm / hr. Product elution was effected with a ten column volume gradient of the wash buffer to this same buffer containing 800 mM NaCl w / o EDTA run at 10 cm / hr. Fractions demonstrating at least ⅓ of the large UV peak were pooled and su...

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

PUM

PropertyMeasurementUnit
temperatureaaaaaaaaaa
temperatureaaaaaaaaaa
temperatureaaaaaaaaaa
Login to View More

Abstract

The present invention provides substantially pure reverse transcriptases, which are preferably substantially free from contamination with nucleic acids. The invention also provides methods for the production of these enzymes, and kits comprising these enzymes which may be used in synthesizing, amplifying or sequencing nucleic acid molecules, including through the use of the polymerase chain reaction, particularly RT-PCR.

Description

CROSS REFERENCE TO RELATED APPLICATIONS[0001]The present application is a continuation of U.S. application Ser. No. 10 / 640,662, filed Aug. 14, 2003, which is a divisional of U.S. application Ser. No. 09 / 533,548, filed Mar. 23, 2000, now U.S. Pat. No. 6,630,333, which claims the benefit of U.S. Provisional Patent Application No. 60 / 126,050, filed Mar. 23, 1999, the disclosures of each of which are incorporated herein by reference in their entireties.BACKGROUND OF THE INVENTION[0002]1. Field of the Invention[0003]The present invention is in the fields of molecular biology, protein chemistry and protein purification. Specifically, the invention provides compositions comprising reverse transcriptases (RTs) and methods for the production of such reverse transcriptase enzymes. Such methods provide for reverse transcriptases that are substantially free from contamination by nucleic acids and other unwanted materials or proteins. Compositions comprising the reverse transcriptase enzymes of ...

Claims

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

Application Information

Patent Timeline
no application Login to View More
Patent Type & Authority Applications(United States)
IPC IPC(8): C12N9/00C12N1/21C12N9/12C12N9/22C12N9/88
CPCC12N9/1276C12N9/1241
Inventor HUGHES, JR., A. JOHN
Owner INVITROGEN
Who we serve
  • R&D Engineer
  • R&D Manager
  • IP Professional
Why Patsnap Eureka
  • Industry Leading Data Capabilities
  • Powerful AI technology
  • Patent DNA Extraction
Social media
Patsnap Eureka Blog
Learn More
PatSnap group products