Non-false positive T vector and preparation

A false positive and carrier technology, applied in the field of T carrier and its preparation, can solve the problems of low efficiency, increased experiment cost, defects of T carrier technology mechanism, etc.

Inactive Publication Date: 2009-08-12
SOUTHWEST UNIVERSITY
View PDF0 Cites 9 Cited by
  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0010] 3. Defects in the technical mechanism of existing T carriers
However, when the T vector is prepared by this method, a small fragment between the two enzyme cutting sites will be produced after digestion of the pre-T vector. If this small fragment is not completely removed in the recovered T vector (large fragment), In T-A cloning, the small fragments will be rejoined into the large fragments of the vector (because they have complementary sticky ends), and can be rejoined in both forward and reverse directions, and the positive clones in the vectors rejoined in the reverse direction can be used to screen the genes. Changes in the ORF of the gene may disrupt its function and form false positive clones
It is very difficult to remove this small fragment 100% in actual production, so false positive clones will also be produced when using this T vector
[0018] Self-ligation of linearized T-carrier molecules with 1 overhanging dT at both 3' ends is more difficult because their two cohesive ends are non-complementary, but self-ligation of such T-carrier molecules does in practice occur and lead to the generation of false positive clones
Of course, the efficiency of this kind of self-connection is not high, which is also consistent with the actual situation: the false positive clone rate in the use of various existing T vectors on the market is usually about 20%.
Although the false positive rate of 20% seems not high, what the user needs must be a true positive clone containing the target fragment! Therefore, when people use the traditional T vector, they have to screen the white colonies again (such as colony PCR screening) to obtain real positive clones after the blue-white screening, which obviously increases the experimental operation steps and increases the experimental cost.

Method used

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
View more

Image

Smart Image Click on the blue labels to locate them in the text.
Viewing Examples
Smart Image
  • Non-false positive T vector and preparation
  • Non-false positive T vector and preparation

Examples

Experimental program
Comparison scheme
Effect test

Embodiment approach 1

[0034] Embodiment 1: Construction of pre-T vector pUC-EcoR V without false positive T vector and preparation of T vector

[0035] Using the universal plasmid vector pUC18 as the starting vector, follow the steps and methods below:

[0036] 1. Construction of pre-T vector pUC-EcoR V:

[0037] commercially available The site-directed mutagenesis kit (product of Strategene) was used to site-directedly mutate the spacer sequence "AACAGCT" between the start codon of the LacZ gene in pUC18 and its upstream RBS according to the method described in its product manual. By designing mutagenic primers to mutate 3 bases, the spacer sequence after mutation is " GATATC T" (the bold base refers to the mutated base, and the underlined sequence is the single enzyme cutting site EcoRV produced after the mutation). The mutated plasmid is the former T vector pUC-EcoRV, which is transformed according to the conventional method Proliferate and preserve in DH5a.

[0038] 2. Preparation of T c...

Embodiment approach 2

[0050] Embodiment 2: Construction of pre-T vector pUC-Xcm I without false positive T vector and preparation of T vector

[0051] Taking the pre-T vector pUC-EcoR V constructed in Embodiment 1 as the starting vector, implement according to the following steps and methods:

[0052] 1. Construction of pre-T vector pUC-Xcm I

[0053] 1) Design an oligonucleotide sequence, which must meet the following design requirements:

[0054] (1) This fragment contains two spaced, tandem Xcm I endonuclease sites. The recognition sequence of Xcm I is CCANNNN N NNNNTGG, N can be A or T or G or C, the eighth nucleotide underlined is the last nucleotide before the cutting point of the enzyme cutting site, which becomes the prominent 3' sticky after enzyme cutting end.

[0055] (2) The eighth nucleotide in the upstream Xcm I site sequence is designed as T, and an RBS site sequence AGGA is designed upstream of this T and as close as possible to this T.

[0056] (3) The eighth nucleotide in the...

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to view more

PUM

No PUM Login to view more

Abstract

The invention relates to a non-false-positive T vector for cloning PCR fragments, and preparation thereof. The T vector is a linearization plasmid vector, of which two 3' ends both have a prominent dT, wherein sites of the T vector in which the PCR fragments of a dA prominent at the 3' ends, namely two tails ends of a linearization T vector, are positioned between an initiation codon of positive-clone selective marker gene and an upstream ribosome bind site. When the T vector designed and constructed according to the invention is used for cloning the PCR fragments, false-positive cloning cannot be produced because of the frame shift of the positive-clone selective marker gene, which is caused by the self connection of the T vector. The T vector overcomes the technical-mechanism disadvantage that the prior T vector produces false-positive clones during application because of the self connection of the vector. Therefore, from a technical mechanism (namely excluding the interference of other experimental factors), the T vector designed by the invention is void of the rate of false-positive cloning when the T vector is applied to T-A cloning.

Description

technical field [0001] The content of the invention belongs to the field of biotechnology, and specifically relates to a T carrier and its preparation. Background technique [0002] 1. Plasmid vector [0003] Molecular cloning technology is the basis of genetic engineering technology. Molecular cloning technology is used to insert a target gene (DNA fragment) into a DNA vector for long-term preservation and mass production of the target gene for subsequent research. The most commonly used molecular cloning vector is the plasmid vector: a closed circular double-stranded DNA molecule capable of autonomous replication and passage in bacterial cells. A plasmid vector for molecular cloning must contain at least the following three functional units: genetic elements necessary for the autonomous replication of the plasmid, 1-2 antibiotic resistance genes, and restriction sites for inserting target DNA fragments. The modern positive screening plasmid vector also includes a screen...

Claims

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to view more

Application Information

Patent Timeline
no application Login to view more
Patent Type & Authority Applications(China)
IPC IPC(8): C12N15/63C12N15/64
Inventor 马跃
Owner SOUTHWEST UNIVERSITY
Who we serve
  • R&D Engineer
  • R&D Manager
  • IP Professional
Why Eureka
  • Industry Leading Data Capabilities
  • Powerful AI technology
  • Patent DNA Extraction
Social media
Try Eureka
PatSnap group products