Transgenic cotton detection chip, kit and use
A detection kit and detection chip technology, applied in the biological field, to achieve the effect of sensitive detection results and low homology
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Embodiment 1
[0049] The inventors of the present invention realized the simultaneous and rapid detection of 8 kinds of transgenic cottons through the visual chip technology for the first time.
[0050] The main detection instruments used:
[0051] Micropipettes (10 μL, 100 μL, 1000 μL Eppendorf), fluorescent quantitative PCR instrument (ABI 7700 Applied Biosystems, USA)), high-speed desktop centrifuge (Pico17Thermo), high-speed pulverizer (IKA-WEARKE GERMANY), nucleic acid and protein analyzer (DYY -6C Beijing Liuyi Instrument Factory), the ultraviolet gel imager is the Gene Genius system produced by Syngene; the AD3200 chip spotting instrument is produced by BioDot.
[0052] Detection of the main reagents:
[0053] The sequences of primers and probes were designed by our laboratory and synthesized by Beijing Aoke Biotechnology Co., Ltd. (see Table 1 for the specific sequences). Taq enzyme, dNTPs, 10×PCR Buffer, ethidium bromide, DNA Ladder Marker (Takara); TaqMan Universal PCR Master Mi...
Embodiment 2
[0080] Simultaneous Detection of Eight Kinds of Transgenic Cotton Using Multiplex PCR
[0081] In this experiment, by adjusting the sequence length and TM value, the annealing temperature of the eight sets of primer sequences was kept at about 60°C, and the hybridization temperature of the eight probes was kept at about 50°C, so as to ensure the simultaneous amplification of the multiplex of the eight transgenic cotton samples. The conditions for PCR and hybridization were the same.
[0082] Firstly, the 8 kinds of samples were detected respectively by conventional PCR method to determine the specificity of each primer sequence (results see image 3 ). The eight sets of primers were set at 5 concentration gradients (0.1 μmol / L, 0.2 μmol / L, 0.4 μmol / L, 0.8 μmol / L, 1.0 μmol / L), and cross-mixed sequentially for multiplex PCR amplification to determine the concentration of multiplex PCR. The optimal concentration of each set of primers in the reaction system.
[0083] The resul...
Embodiment 3
[0085] Taking sample Mon 1445 as an example, determine the spotting concentration of the hybridization probe. Spot the Probe-Mon 1445 (SEQ ID NO.17) probe solution with a concentration of 1 μmol / L, 5 μmol / L, and 10 μmol / L sequentially on the chip, and perform a hybridization test according to the conditions described in Example 1. The result is as Figure 4 As shown, the hybridization signal intensity of the three probes is basically the same, that is, when the probe concentration is 1 μmol / L, it has reached saturation, and on this basis, increasing the probe concentration has little effect on the hybridization signal strength.
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