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PCR analysis method for quantitative detection of microRNA

A quantitative detection and analysis method technology, applied in the field of detection and analysis, can solve problems such as increased cost and design complexity, and achieve the effects of low cost, reduced detection error, and wide application range

Inactive Publication Date: 2013-09-25
EAST CHINA UNIV OF SCI & TECH
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Although the microRNAs detection method based on the RT-PCR reaction has the characteristics of rapidity, strong specificity, and high sensitivity, it requires reverse transcription, which undoubtedly increases the cost of the experiment and the complexity of the design.
Therefore, it is still a challenge to develop a microRNAs analysis technology that is simple and straightforward, has high sensitivity, strong specificity, wide application range, low detection cost, and accurate and reliable results.

Method used

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  • PCR analysis method for quantitative detection of microRNA
  • PCR analysis method for quantitative detection of microRNA
  • PCR analysis method for quantitative detection of microRNA

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Experimental program
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Effect test

Embodiment 1

[0052] The analysis method of let-7a (5′-UGAGGUAGUAGGUUGUAUAGUU-3′) is detected by one-step real-time quantitative PCR based on the principle of base stacking hybridization. The detection principle is as follows: figure 1 shown. TaqDNA polymerase and double-stranded DNA-specific dye SYBR Green I were used. The functional sequence on the DNA amplification template is the same sequence as the reverse primer (5′-GGCTAAGACAGATGCTC-3′), the target let-7a binding sequence (5′-AACTATACAACCTACTACCTCA-3′) and the forward primer binding sequence (5′ -TCGCCT-3').

[0053] The following specific implementation of let-7a detection will further illustrate the present invention. For the experimental methods that do not indicate the specific conditions, usually follow the conventional conditions or the conditions suggested by the manufacturer. The specific operation steps are as follows: Add 2 μL of reaction buffer solution (50 mM Tris-HCl, 20 mM potassium chloride, 10 mM ammonium sulfate,...

Embodiment 2

[0061] Using one-step real-time quantitative PCR based on the principle of base stacking hybridization to detect miR-141, miR-141 (5′-UAACACUGUCUGGUAAAGAUGG-3′) analysis method, the detection principle is as attached Figure 7 shown. TaqDNA polymerase and double-stranded DNA binding dye SYBR Green I were used. The functional sequence on the DNA amplification template is the same sequence as the reverse primer (5′-GGCTAAGACAGATGCTC-3′), the target miR-141 binding sequence (5′-CCATCTTTACCAGACAGTGTTA-3′) and the forward primer binding sequence (5′ -TCGCACT-3′).

[0062] The following specific implementation of miR-141 detection will further illustrate the present invention. For the experimental methods that do not indicate the specific conditions, usually follow the conventional conditions or the conditions suggested by the manufacturer. The specific operation steps are as follows: Add 2 μL of reaction buffer solution (50 mM Tris-HCl, 20 mM potassium chloride, 10 mM ammonium s...

Embodiment 3

[0065] An analysis method for detecting miR-21 (5′-UAGCUUAUCAGACUGAUGUUGA-3′) by one-step real-time quantitative PCR based on the principle of base stacking hybridization, the detection principle is as attached Figure 8 shown. TaqDNA polymerase and double-stranded DNA binding dye SYBR Green I were used. The functional sequence on the DNA amplification template is the same sequence as the reverse primer (5′-GGCTAAGACAGATGCTC-3′), the target miR-21 binding sequence (5′-TCAACATCAGTCTGATAAGCTA-3′) and the forward primer binding sequence (5′ -TCGCACT-3′).

[0066] The following specific implementation of miR-21 detection will further illustrate the present invention. For the experimental methods that do not indicate the specific conditions, usually follow the conventional conditions or the conditions suggested by the manufacturer. The specific operation steps are as follows: Add 2 μL of reaction buffer solution (50 mM Tris-HCl, 20 mM potassium chloride, 10 mM ammonium sulfate, ...

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Abstract

The invention discloses a PCR analysis method for the quantitative detection of microRNA based on a base stacking hybridization principle. The method comprises the following steps: stabilizing the combination of a forward primer with a DNA amplification template through a base stacking hybridization effect after the combination of target microRNA with the DNA amplification template, extending the forward primer under the action of a DNA polymerase, initiating a PCR reaction under the combined action of the extended forward primer and a reverse primer to obtain double-stranded DNA, combining a dye SYBR Green I with the double-stranded DNA, determining the fluorescence signal intensity in a reaction system in real time, comparing with a standard work curve, and calculating to obtain the concentration of the target microRNA. The method has the characteristics of high sensitivity, strong specificity, simple operation, low cost and the like, and can be widely used for detecting microRNA in the biological samples of tissues, blood or cells.

Description

technical field [0001] The invention belongs to the field of detection and analysis, in particular to a PCR analysis method for quantitative detection of microRNA based on the principle of base stacking hybridization. Background technique [0002] MicroRNAs are a class of endogenous non-coding RNAs with regulatory functions found in eukaryotes, with a size of about 18-25 nucleotides. Mature microRNAs are produced by a series of nuclease cleavage and processing of longer primary transcripts, and then assembled into RNA-induced silencing complexes, which recognize target mRNAs by base pairing, and according to the degree of complementarity Differently direct the silencing complex to degrade target mRNAs or prevent translation of target mRNAs. microRNAs are involved in a wide variety of regulatory pathways, including development, viral defense, hematopoietic processes, organ formation, cell proliferation and apoptosis, fat metabolism, etc. The abnormal expression of microRNAs...

Claims

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Application Information

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IPC IPC(8): C12Q1/68
Inventor 叶邦策尹斌成于翠媛
Owner EAST CHINA UNIV OF SCI & TECH