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Fluorescent quantitation PCR detection kit and detection method for PIK3CA (phosphatidylinositol3-kinase catalytic alpha) gene mutations

A detection kit and fluorescence quantitative technology, applied in the field of molecular biology, can solve the problems of limited detection accuracy, easy pollution and complicated operation of direct sequencing method, and achieve the effects of fast detection speed, strong specificity and strong selectivity.

Inactive Publication Date: 2014-05-07
宁波有成生物医药科技有限公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

The detection sensitivity of direct DNA sequencing method is only 20-30%, that is, tumor samples must contain 20-30% mutation-positive cells to be detected; for the detection of small samples of pathological tissue, the detection accuracy of direct sequencing method is limited, it is difficult to Meet the needs of practical applications
At the same time, this method is easy to cause pollution and false positives; the operation is complicated and time-consuming (usually it takes 2 to 3 days to get the test result)

Method used

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  • Fluorescent quantitation PCR detection kit and detection method for PIK3CA (phosphatidylinositol3-kinase catalytic alpha) gene mutations
  • Fluorescent quantitation PCR detection kit and detection method for PIK3CA (phosphatidylinositol3-kinase catalytic alpha) gene mutations
  • Fluorescent quantitation PCR detection kit and detection method for PIK3CA (phosphatidylinositol3-kinase catalytic alpha) gene mutations

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0034]Example 1: Detection of PIK3CA gene A3140G (H1047R), A3140T (H1047L) mutants

[0035] Tumor tissues (including fresh tissues and paraffin sections) of 68 patients clinically diagnosed as colon cancer were collected, and genomic DNA was extracted as a template. Among them, about 1.0 g of fresh pathological tissue was taken, and genomic DNA was extracted using a DNA extraction kit from Qiagen; paraffin section samples were cut into sections of about 10 μm, dewaxed with xylene, and extracted using a paraffin-embedded DNA extraction kit from Qiagen Extract genomic DNA. The extracted genomic DNA was dissolved in TE buffer, that is, 10mmol / L Tris-HCl (pH8.0) and 1mmol / L EDTA (pH8.0), and the concentration was measured by an ultraviolet spectrophotometer to prepare a 50ng / μL solution. as a template for PCR amplification.

[0036] Primers and fluorescent probes capable of specifically detecting PIK3CA gene A3140G (H1047R) and A3140T (H1047L) mutations were designed, and the se...

Embodiment 2

[0042] Example 2: Detection of G1633A (E545K) mutation in exon 9 of PIK3CA gene

[0043] One strain of the plasmid template containing the G1633A (E545K) mutation was used in the experiment, and two strains of cell lines were respectively H1650 and H460 (both PIK3CA gene wild type. Utilize the method for detecting PIK3CA gene No. 9 exon G1633A (E545K) mutation provided by the invention as follows:

[0044] Genomic DNA of plasmids and cell lines was extracted using Qiagen's DNA extraction kit. The extracted genomic DNA was dissolved in TE buffer, that is, 10mmol / LTris-HCl (pH8.0) 1mmol / LEDTA (pH8.0), the concentration was measured by a UV spectrophotometer, and a solution of 50ng / μL was made into a solution for PCR Amplified template.

[0045] Primers and fluorescent probes capable of specifically detecting the G1633A (E545K) mutation of the PIK3CA gene were designed, and the sequences are shown in Table 2.

[0046] The total volume of the fluorescent PCR amplification reac...

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Abstract

The invention relates to the field of molecular biology, in particular to a method for detecting gene mutations by adopting fluorescent quantitation PCR, as well as a fluorescent quantitation PCR detection kit and a detection method for PIK3CA (phosphatidylinositol3-kinase catalytic alpha) gene mutations. The method comprises the following steps: designing a specific primer and a probe; preparing a fluorescent quantitation PCR reaction system and designing reaction conditions; amplifying a mutant gene target sequence in a sample by utilizing the specific primer; detecting the fluorescence signal strengths of FAM, HEX and Cy5 in the reaction system, and taking the fluorescence signal strengths as judgement standards of results. The kit provided by the invention can detect 8 types of mutations of a PIK3CA gene simultaneously; the specificity and the selection capability are high; a PIK3CA mutated molecule, which is as low as 5 copy, can be detected in a clinical sample of which the mutation content is only 0.1 percent; the detection speed is high, that is, the detection can be fulfilled within 90 minutes.

Description

technical field [0001] The invention relates to the field of molecular biology, in particular to a method for detecting gene mutations by fluorescent quantitative PCR, in particular to a fluorescent quantitative PCR detection kit and detection method for PIK3CA gene mutations, which can be detected in clinical samples with only 0.1% mutation content As few as 5 copies of PIK3CA mutant molecules were detected. Background technique [0002] Phosphatidylinositol-3-kinase (PI3K) is an important signal transduction pathway molecule. It consists of a catalytic subunit p110 and a regulatory subunit p85. According to the structural characteristics of p110 and different substrate molecules, PI3K can be divided into three subtypes: type I, type II and type III. PI3K-mediated signal transduction pathway plays an important role in cell proliferation, transformation, apoptosis and tumorigenesis, and regulates the proliferation and survival of tumor cells. Studies have found that dysre...

Claims

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Application Information

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IPC IPC(8): C12Q1/68G01N21/64
CPCC12Q1/686C12Q2563/107
Inventor 周细武邱英华徐玉莲
Owner 宁波有成生物医药科技有限公司
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