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Multiple PCR (Polymerase Chain Reaction) primer groups and detection method for synchronously detecting four pathogenic bacteria of siluriformes fish

A detection method and technology for pathogenic bacteria, which are applied in biochemical equipment and methods, recombinant DNA technology, and microbial determination/inspection, etc. Rapid identification, good sensitivity, and easy operation

Active Publication Date: 2017-06-20
扬州宏盛水产科技有限公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

What's more troublesome is that DNA polymerases have different amplification efficiencies for different primers, and different amplified fragments in multiplex PCR will compete with each other for resources, often resulting in unbalanced amplification efficiencies, resulting in false negative results. High-efficiency fragments can be easily detected, while low-efficiency fragments are completely reduced to the background
At the same time, primer dimers are prone to appear, which brings difficulties to the detection

Method used

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  • Multiple PCR (Polymerase Chain Reaction) primer groups and detection method for synchronously detecting four pathogenic bacteria of siluriformes fish
  • Multiple PCR (Polymerase Chain Reaction) primer groups and detection method for synchronously detecting four pathogenic bacteria of siluriformes fish
  • Multiple PCR (Polymerase Chain Reaction) primer groups and detection method for synchronously detecting four pathogenic bacteria of siluriformes fish

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Experimental program
Comparison scheme
Effect test

Embodiment 1

[0046] The extraction of embodiment 1 DNA

[0047] Genomic DNA was extracted using a DNA kit as a template

Embodiment 2

[0048] Embodiment 2 Establishment of multiplex PCR amplification method

[0049] Firstly, through single gene-specific PCR, the reaction system and reaction conditions for each pair of primer sets to amplify the corresponding gene fragments were preliminarily explored. The genomic DNAs of the four pathogenic bacteria were extracted separately as the amplification templates of the respective primer sets. Through multiple experiments, it was found that each pair of primer sets can well amplify the corresponding gene fragments under the following reaction systems and conditions.

[0050] 1. Establishment of single-gene PCR reaction system and reaction conditions

[0051] 1), the system and conditions of the single-gene-specific PCR reaction of Edwardsiella catfish

[0052] PCR reaction system:

[0053]

[0054] PCR reaction conditions: pre-denaturation at 98°C for 5min, denaturation at 98°C for 30s, annealing at 57-60°C for 30s, extension at 72°C for 1min, 30 cycles, and fin...

Embodiment 3

[0080] The electrophoretic detection of embodiment 3 PCR amplification product

[0081] Use conventional electrophoresis buffer TAE buffer (0.04mol / L Tris-acetic acid, 0.001mol / L EDTA) to configure 1.2% agarose gel. After sample application, set the voltage to 100-140 volts and perform electrophoresis for 20-40 minutes.

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Abstract

The invention discloses multiple PCR primer groups and a PCR detection method for synchronously detecting four pathogenic bacteria of a siluriformes fish. The multiple PCR primer groups and the PCR detection method have the advantages that high detection efficiency and accurate results are achieved, and the four pathogenic bacteria of the siluriformes fish can be synchronously detected. The multiple PCR primer groups comprise a catfish edwardsiella ictaluri primer pair, a flavobacterium cloumnare primer pair, an aeromonas hydrophila primer pair and an aeromonas punctata primer pair. The four pairs of PCR primer groups for different pathogenic bacteria are designed; one multiple PCR is established by utilizing the primer groups; the purpose of synchronously and quickly identifying the four pathogenic bacteria is realized; moreover, the sensibility is good, the specificity is high; relative to a conventional detection method, the cost needed by the PCR detection method is lower; the operation is simpler and more convenient; the needed time is shorter; the pertinence is high; the multiple PCR primer groups can be applied to the analysis and the detection of any one bacterial sample in multiple environments containing catfish edwardsiella ictaluri, aeromonas punctata, flavobacterium cloumnare and aeromonas hydrophila.

Description

technical field [0001] The present invention relates to the field of biotechnology, in particular to a primer sequence for simultaneously detecting four pathogenic bacteria of Siluriformes cultured fish, Edwardsiella silgi, Flavobacterium columnar, Aeromonas hydrophila and Aeromonas punctatus and detection methods. Background technique [0002] Siluriformes have become the focus of freshwater aquaculture development in the world: channel catfish are mainly raised in the United States; catfish, catfish and channel catfish are mainly raised in Europe; catfish and catfish are mainly raised in Africa; The southern largemouth catfish, leatherbeard catfish, bearded catfish, long-snout catfish, river yellow catfish, big fin catfish, etc. are being raised in large quantities as special aquatic products, and the current development momentum is very fast, among which yellow catfish is the most popular. Yellow catfish is a small fish that is widely distributed in major freshwater wate...

Claims

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Application Information

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IPC IPC(8): C12Q1/68C12Q1/04C12N15/11
CPCC12Q1/686C12Q1/689C12Q2600/16C12Q2537/143
Inventor 张秧兆熊凡王桂堂张露邹红
Owner 扬州宏盛水产科技有限公司
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