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A method for large-scale screening of protein biomarkers

A biomarker and protein technology, applied in the field of molecular biology, can solve the problems of small dynamic range, poor consistency, and high cost, and achieve the effects of low cost, large number of screenings, and accurate screening results

Active Publication Date: 2022-05-31
湖北普罗金科技有限公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0011] When the above method is used for biomolecular marker screening, there are disadvantages such as high cost, small dynamic range, and poor consistency.

Method used

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  • A method for large-scale screening of protein biomarkers

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Experimental program
Comparison scheme
Effect test

Embodiment 1

[0026] 4 g of mouse liver tissue control samples and 4 g of pathological samples were cut into pieces and transferred to a homogenizer. PMSF / isopropanol stock solution (2 mL) was added to the pre-chilled lysis buffer. Quickly add 2 mL of pre-chilled lysis buffer to the homogenizer, and grind thoroughly in an ice bath. The tissue grinding fluid was transferred to a 1.5 mL centrifuge tube and centrifuged at 4°C (14000 rpm, 10 min). After centrifugation, suck the supernatant and transfer it to a new 1.5mL centrifuge tube, which is the crude tissue protein extract. The obtained protein extract can be stored at -20°C for subsequent experiments.

[0027] The above-mentioned protein extracts were spotted with a spotter and fixed in 96-well plates to react for 1 hour. The plate was blocked with a solution containing skim milk to prevent non-substantial substances from sticking to the chip. Take out the material in the orifice plate, crush the glue with a glass rod, dissolve it wit...

Embodiment 2

[0054] Take 4g of mouse spleen tissue control sample and 4g of pathological tissue and put it in 4ml of protein lysis solution A (10mmol / LMgCl2, 1mmol / LKCl, 1mmol / L phenyltetraylsulfonyl fluoride, 1mmol / L dithiothreitol), homogeneously Slurry until the particles are invisible to the naked eye, add a few drops of 3 mmol / L sucrose to mix well, centrifuge at 10,000 r / min at 4°C for 30 min, and discard the supernatant. Dissolve the precipitate in 3-5 times protein lysis solution (0.5mol / LKCl) and mix well. After centrifugation at 10000r / min for 30 min at 4°C, take the supernatant and store it at -80°C for later use.

[0055] The above-mentioned protein extracts were spotted with a spotter and fixed in 96-well plates to react for 1 hour. The plate was blocked with a solution containing skim milk to prevent non-substantial substances from sticking to the chip. Take out the material in the orifice plate, crush the glue with a glass rod, dissolve it with buffer solution (0.3% bromoph...

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Abstract

The invention discloses a method for large-scale screening of protein biomarkers. The screening method includes (1) homogenizing and lysing biological tissue control samples and reference samples (pathological samples); (3) Use LC-MS / MS for protein identification; (4) Analyze the abundance changes of sample proteins by comparing the number of mass spectrometry analysis times or mass spectrometry peak intensities. Based on MS1, calculate The signal intensity of each peptide is integrated on LC-MS, based on the identification results of MS2, and the data is corrected on a large scale; (5) The protein biomarkers that are significantly up-regulated or down-regulated are screened out through the corrected data analysis results thing. The operation of the invention does not need expensive labeling reagents, the cost is low, the number of screenings at one time is large, and the screening results are accurate.

Description

technical field [0001] The invention belongs to the field of molecular biology, and in particular relates to a method for large-scale screening of protein biomarkers using proteomics quantitative technology. Background technique [0002] Biomarkers refer to biochemical indicators that can mark the changes or possible changes in the structure or function of systems, organs, tissues, cells and sub-cells, and have a very wide range of uses. Biomarkers can be used for disease diagnosis, disease staging, or to evaluate the safety and efficacy of new drugs or treatments in target populations. [0003] For disease research, a biomarker generally refers to a certain characteristic biochemical index in a common physiological or pathological or therapeutic process that can be objectively measured and evaluated. By measuring it, the biological process that the body is currently in can be known. process in . Examining a disease-specific biomarker may be helpful for disease identificat...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): G01N30/02
CPCG01N33/6848
Inventor 葛峰杨明坤张珈熊倩洪斌李俊峰刘光猛
Owner 湖北普罗金科技有限公司