Method for extracting RNA from extracellular vesicles

An extraction method and vesicle technology, applied in the field of RNA extraction in extracellular vesicles, can solve the problems of RNA extraction failure, failure to see precipitation, insufficient RNA, etc., achieve short extraction time, facilitate follow-up experiments, and improve yield effect

Pending Publication Date: 2019-03-01
上海叶知生物医药科技有限公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0004] However, since extracellular vesicle samples are not easy to obtain, and generally the amount is very small, the above-mentioned traditional method for extracting extracellular vesicle RNA has the following disadvantages: 1. In step 4, isopropanol captures the surrounding RNA Combine water to promote RNA aggregation. Since the RNA content in extracellular vesicle samples is small, and RNA is slightly soluble in water, isopropanol alone is not enough to precipitate the RNA in the system. This step will bring great Proportional RNA loss, or even RNA extraction failure
2. In step 6, due to the small amount of RNA precipitation without the protection of other substances, and because the RNA is slightly soluble in water, the trace amount of RNA is directly soluble in water during the washing process, resulting in RNA extraction failure
3. In step 6 and step 7, the RNA is precipitated by centrifugation, but since the sample of extracellular vesicles is usually very small, the amount of RNA extracted is also very small, and the precipitation is usually not visible. The RNA precipitate was sucked away and discarded, which caused RNA extraction failure

Method used

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  • Method for extracting RNA from extracellular vesicles
  • Method for extracting RNA from extracellular vesicles
  • Method for extracting RNA from extracellular vesicles

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0036] A method for extracting RNA in extracellular vesicles, the extraction method comprising the following steps:

[0037] S1: Isolate and purify extracellular vesicles in biological samples, add 1 mL of RNA extraction reagent (such as trizol) to 100 μg of extracellular vesicles and repeatedly blow and lyse the isolated and purified extracellular vesicles; the extracellular vesicles Including at least one of exosomes, microvesicles, apoptotic bodies and bacterial outer membrane vesicles (OuterMembrane Vesicles).

[0038] S2: Add 200 μL of chloroform, shake vigorously for 15 seconds, let stand at room temperature for 5 minutes, and centrifuge at 12,000 g for 15 minutes to make the RNA in step S1 enter the water phase; transfer the upper water phase containing RNA to a new centrifuge tube ;

[0039] S3: Add isopropanol having an equal volume to the water in the upper layer of step S2 to the aqueous phase containing RNA obtained in step S2, and gently invert and mix;

[0040]...

Embodiment 2

[0048] A method for extracting RNA in extracellular vesicles, the extraction method comprising the following steps:

[0049] S1: Isolate and purify extracellular vesicles in a biological sample, add 1 mL of RNA extraction reagent (such as trizol) to 200 μg of extracellular vesicles and repeatedly blow and lyse the isolated and purified extracellular vesicles; the extracellular vesicles include extracellular vesicles At least one of exosomes, microvesicles, apoptotic bodies and bacterial outer membrane vesicles;

[0050] S2: Add 200 μL of chloroform, shake vigorously for 15 seconds, let stand at room temperature for 5 minutes, and centrifuge at 12,000 g for 15 minutes to make the RNA in step S1 enter the water phase; transfer the upper water phase containing RNA to a new centrifuge tube ;

[0051] S3: Add isopropanol having an equal volume to the water in the upper layer of step S2 to the aqueous phase containing RNA obtained in step S2, and gently invert and mix;

[0052] S4...

Embodiment 3

[0060] Embodiment 3: Concentration and purity contrast of RNA

[0061] Experimental group: the method in Example 2 was used to extract RNA from extracellular vesicle samples.

[0062] Control group: the RNA in the extracellular vesicles exactly the same as that of the experimental group was extracted by the traditional method (the method mentioned in the background art).

[0063] Nanodrop detects the RNA obtained in the experimental group and the comparison group, as shown in Table 1 and attached Figure 2~3 shown. The RNA concentration detected in the experimental group was 211.7±23.4ng / μL, while that in the control group was only 47.1±22.6ng / μL. For the same type and content of raw extracellular vesicles, the experimental group was more than 160ng / μL higher than the control group , the concentration is more than 5 times higher, the difference is extremely large. The purity (260 / 280) of the obtained RNA is well known in the art, but its purity is better at 1.90 to 2.00, th...

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Abstract

The invention relates to a method for extracting RNA from extracellular vesicles. The method comprises the following steps: S1, separating and purifying the extracellular vesicles in a biological sample, and cracking the separated and purified extracellular vesicles; S2, adding an organic solvent to enable RNA to enter a water phase; S3, adding an alcohol organic solvent to the RNA containing water phase obtained in step S2; S4, adding a cation containing reagent for binding with negatively charged RNA; S5, adding a solution containing an inert coprecipitation reagent component; S6, centrifuging the solution obtained in step S5 to obtain RNA precipitate; S7: washing the precipitate and redissolving the precipitate to obtain an extracellular vesicle RNA solution. The method for extracting RNA has the advantages of short extraction time, low cost, high yield, high purity, good effect and the like, and facilitates subsequent tests.

Description

technical field [0001] The invention relates to the field of biotechnology, in particular to a method for extracting RNA in extracellular vesicles. Background technique [0002] Extracellular vesicles refer to all membrane vesicle structures wrapped by phospholipid bilayer structure released by cells into the external environment. Common extracellular vesicles include exosomes, microvesicles, apoptotic bodies, and bacterial outer membrane vesicles. [0003] The principle of the current conventional extracellular vesicle RNA extraction method is to use phenol as the main extraction reagent supplemented with guanidine isothiocyanate or β-mercaptoethanol to depolymerize proteins and nucleic acids and denature proteins at the same time, because phenol is not enough to inhibit RNA Enzymatic activity therefore requires the use of guanidine isothiocyanate or β-mercaptoethanol to denature RNases. Then add chloroform and other reagents to extract the RNA in the sample and then cent...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12N15/10
CPCC12N15/1003
Inventor 赵淑辉
Owner 上海叶知生物医药科技有限公司
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