Copy number variation molecular marker related to daily gain and market weight day age of pig on pig chromosome 3 and application
A technology of copy number variation and molecular markers, which is applied in the field of molecular biotechnology and molecular markers, can solve problems affecting phenotype, changes, gene dosage effects, gene structures, etc., and achieve the goals of shortening the age, increasing economic benefits, and improving growth performance Effect
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Embodiment 1
[0045] (1) Experimental animals
[0046] The group of experimental pigs used in the present invention is 2857 purebred plus line Duroc of Wen's Food Group Co., Ltd. Breeding Pig Branch, which is the core group of Breeding Pig Branch.
[0047] In this experiment, a total of 2857 Canadian Duroc pigs were selected in this resource group. The pigs had free access to food and water, and the entire feeding method and feeding conditions were always consistent, which was a conventional method.
[0048] (2) Sample collection
[0049] The above-mentioned piglet docked tail and ear tissues were collected and soaked in ethanol solution with a volume fraction of 75%, and stored in a -20°C refrigerator for later use.
[0050] (3) 50K SNP typing in the whole pig genome
[0051] The ear tissue or docked tail tissue collected from each of the 2857 Duroc breeding pigs selected from the above-mentioned resource groups, the whole genome DNA was extracted by the standard phenol-chloroform method...
Embodiment 2
[0064] Example 2 Target DNA sequence amplification and sequencing
[0065] (1) Primer design
[0066] Download the specific DNA sequence (SEQ ID NO: 1) located in the 162027bp-2026411bp sequence on the chromosome 3 of the pig as a reference sequence through the NCBI website (http: / / www.ncbi.nlm.nih.gov), and use Primer design software primer premier 6.0 designed qPCR primers (primer pair P1). At the same time, using the porcine GCG gene sequence (NC_010457.5) published by NCBI as a reference sequence, qPCR primers (primer pair P2) were designed using the same method. The DNA sequences of the designed primer pair P1 and P2 are shown below.
[0067] Primer pair P1 is:
[0068] Upstream primer F1: 5'-CTCCCACTCCACCCACCCTAAAG-3',
[0069] Downstream primer R1: 5'-TGCGGACGGAAAGATGAGAACAAG-3';
[0070] Primer pair P2 is:
[0071] Upstream primer F2: 5'-TGCAGAACTACAGGGCTCAGGAC-3',
[0072] Downstream primer R2: 5'-GTGGAACAGGGCAGGTGGAAAG-3';
[0073] (2) qPCR amplification
[...
Embodiment 3
[0085] Example 3 Copy number type qPCR verification and effect analysis of copy number variation molecular markers
[0086] According to Tables 1 and 2, it can be seen that for daily weight gain, the effect of dominant copy number type (normal copy number) in the CNV region is significantly higher than the average value of the copy number gain type phenotype by 8.65; The effect of the copy number type (normal copy number) was significantly shortened by 2.33 compared to the copy number gain type phenotype mean. Therefore, by using molecular marker-assisted selection to gradually eliminate pigs with increased copy number types in the group, the frequency of normal copy number types can be significantly increased, the daily weight gain of the group can be increased, and the age at market weight of the group can be shortened. To short-term high yield, thus bringing huge economic benefits to farming enterprises.
[0087] The present invention detects the copy number variation of t...
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