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Polypeptide for inducing protein degradation and application thereof

A protein degradation and protein technology, applied in the direction of peptide/protein components, fusion polypeptides, fusion with degradation motifs, etc., can solve the problem of lack of peptides, and achieve the effect of inhibiting degradation

Active Publication Date: 2021-11-09
SHANGHAI TECH UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0005] In order to solve the technical problem of the lack of effective polypeptides that can induce any protein degradation in the prior art, the present invention provides a polypeptide that induces protein degradation and its application

Method used

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  • Polypeptide for inducing protein degradation and application thereof
  • Polypeptide for inducing protein degradation and application thereof
  • Polypeptide for inducing protein degradation and application thereof

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0054] Example 1: Construction of target protein and degradation protein fusion plasmid

[0055] Fusion expressing a specific polypeptide sequence and target protein to construct a plasmid for fusion expression. After sequencing and identification, the plasmid was transfected into HEK293 host cells; after plasmid transformation, observed under a fluorescent microscope, the successfully transfected cells showed red fluorescence.

[0056] Specific steps are as follows:

[0057] In this example, there are two ways of linking the polypeptide to the target protein,

[0058] 1. The plasmid in this example is pcDNA3.1, the mCherry protein is used as a reporter gene, and the N-terminus is mCherry tandem p2A self-shearing isolated polypeptide, followed by GFP-protein degradation-inducing polypeptide (abbreviated as GFP-degradation-inducing polypeptide, specific example is SEQ ID NO: 1).

[0059] 2. The plasmid in this example is pcDNA3.1, the GFP protein is used as a reporter gene, t...

Embodiment 2

[0066] Example 2: Fluorescence detection for target protein

[0067] In this example, after 24 hours, the cells in Example 1 were collected, placed under an inverted fluorescence microscope, and the green fluorescent protein was observed with a fluorescence excitation wavelength of 488nm, and the fluorescence signal of mcherry was observed with a fluorescence excitation wavelength of 520nm. The control plasmid was mCherry-p2A tandem GFP without protein-inducing degradation polypeptide.

[0068] Experimental results: The cells introduced with the engineered plasmid showed reporter gene fluorescence under a fluorescent microscope, indicating that the recombinant plasmid was successfully introduced into the host cell, and the fluorescent signal of the protein in series with the degraded protein was attenuated.

[0069] figure 2 The results indicated that whether SEQ ID NO:1 is linked at the N-terminus or the C-terminus, it can effectively degrade the fusion protein. image 3 T...

Embodiment 3

[0073] Example 3: Fluorescence detection for target protein

[0074] In this example, the cells in Example 1 were used, a proteasome inhibitor (MG132) was added to the culture medium, 2.5 μM MG132 was added, and after 12 hours, 24 hours and 38 hours, the Use the fluorescence excitation wavelength of 520nm to observe the green fluorescent protein, and use the fluorescence excitation wavelength of 520nm to observe the fluorescence signal of mcherry. The control plasmid was mCherry-p2A tandem GFP without protein-inducing degradation polypeptide.

[0075] Figure 5 The results indicated that the inhibitor MG132 could block the peptide-induced protein degradation, and it increased with time.

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PUM

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Abstract

The invention discloses a polypeptide fragment, the amino acid sequence of the polypeptide fragment is obtained by substitution, deletion or increase of 1-13 preferably 1-8 amino acid residues on the amino acid sequence as shown in SEQ ID NO: 1, and maintains the function of the polypeptide fragment as shown in SEQ ID NO: 1, and the function is to degrade a target protein or degrade a protein combined with the target protein. The invention further discloses a polypeptide composition containing the polypeptide fragment, a conditional knockout or expression kit and a set kit, and application thereof in degradation of target protein or preparation of drugs for degrading the protein. The polypeptide fragment disclosed by the invention can be combined with any protein to induce the target protein to be degraded by proteasome, so that the target protein is knocked out, and an off-target effect is avoided. The kit disclosed by the invention can be used for inhibiting the degradation effect by using a drug, retrieving the knocked-out protein and carrying out conditional knockout, and is used for functional research of target protein.

Description

technical field [0001] The invention belongs to the field of biotechnology, and relates to a polypeptide for inducing protein degradation and an application thereof. The polypeptide can be combined with a target protein and induce the degradation of the target protein. Background technique [0002] Protein degradation is a protective mechanism of cells. When external environmental stimuli or intracellular proteins are misfolded, degrading misfolded proteins is a strategy to maintain the homeostasis of the intracellular environment. The protein that has been discovered and studied thoroughly so far Degradation methods include protein ubiquitination degradation, lysosomal degradation, etc. (Komander D, RapeM, Annu Rev Biochem 81:203-229.(2012); Salami J, Crews CM.Science 355,1163-1167.(2017)) . The occurrence of many diseases is caused by protein mutations or wrong functions, but many wrong protein functional regions cannot do without small molecules with strong binding and f...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C07K14/00C07K19/00A61K45/06A61K38/16A61P43/00A61P35/02A61P35/00
CPCC07K14/00A61K45/06A61K38/16A61P43/00A61P35/00A61P35/02C07K2319/95C07K2319/60C07K2319/00A61K38/00A61K2300/00
Inventor 马培翔杨光黄行许
Owner SHANGHAI TECH UNIV