Nucleic acid amplification detection method and detection kit for distinguishing DNA from corresponding RNA

A detection method and kit technology, applied in the field of medical detection, can solve the problems of indistinguishability, harsh test conditions, difficult and fast detection, etc., and achieve the effect of simple and fast operation and low operation difficulty

Inactive Publication Date: 2011-01-19
SHANGHAI KEHUA BIO ENG
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

The main problem is that the equipment and reagents are expensive, the detection time is still long, and the reliability of the results is still controversial compared with the traditional culture method, etc., and it is difficult to use it as a rapid detection
(6) Phage biological amplification method: high sensitivity, up to 100 bacteria/ml, but compared with bacterial culture, the test conditions are more stringent and the detection rate is low, so the current evaluation is not high
However, there is no reagent for simultaneously detecting its DNA and RNA in the existing tuberculosis diagnosis. The reason is that there is a lack of a nucleic acid amplification method that can specifically detect its DNA and RNA simultaneously, such as the PCR method. Amplification of RNA requires a reverse transcription (RT) process to convert RNA into DNA and then amplify. The corresponding DNA and RNA cannot be distinguished. For example, when 16Sr RNA is det

Method used

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  • Nucleic acid amplification detection method and detection kit for distinguishing DNA from corresponding RNA
  • Nucleic acid amplification detection method and detection kit for distinguishing DNA from corresponding RNA
  • Nucleic acid amplification detection method and detection kit for distinguishing DNA from corresponding RNA

Examples

Experimental program
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Effect test

Embodiment 1

[0098] Example 1 Verification of specific RNA detection and verification of end conversion template synthesis

[0099] Freeze-dried BCG from Shanghai Institute of Biological Products, redissolved in 1ml of normal saline, and washed with normal saline 10.

[0100] Doubling serial dilutions were made into serial concentrations. 1:10, 1:100 diluted concentration of BCG samples, take 0.1ml of nucleic acid extraction reagent (column membrane method, Qiagen) to extract and purify the total nucleic acid, use KOH to treat the total nucleic acid (add KOH to the nucleic acid template to a final concentration of 0.3M, 37°C to hydrolyze the RNA for 7 days to completely degrade the RNA), and finally neutralize the pH value to neutral with 1M hydrochloric acid, add water to dilute it about 10 times (acid-base neutralization to generate a higher concentration of salt may bring adverse effects to downstream operations To be on the safe side, dilute it to reduce the salt concentration in the ...

Embodiment 2

[0102] Specificity (MTC specificity) and sensitivity of embodiment 2 kit

[0103] Most of the following mycobacterial strains come from the Institute of Bioinspection (Vaccin Department of China Institute for the Control of Pharmaceutical and Biological Products), including: Mycobacterium scrofulaceum (M.scrofulaceum), Mycobacterium kansasii (M.kansassi), intracellular M.intracellulare, M.fortuitum, M.flavescens, M.avium, M.marinum, Di Mycobacterium smegmatis (M.smegmatis), Mycobacterium smegmatis (M.smegmatis), Mycobacterium smegmatis (M. gastri), Mycobacterium toads (M.xenopi), Mycobacterium terrae (M.terrae), Mycobacterium secondary (M.triviale), Mycobacterium abscessus (M.abscessus), Mycobacterium achromosum ( M.nonchromogenic), Mycobacterium tuberculosis human (M.tuberculosis), Mycobacterium bovis (M.bovis), BCG (M.bovisBCG), Mycobacterium simian (M.simiae), Mycobacterium paratuberculosis Bacillus (M.paratuberculosis), M.chelorae.

[0104] In addition, other microorgan...

Embodiment 3

[0106] The same tube detection of embodiment 3 kit and its application

[0107] According to the aforementioned embodiments of the present invention, the primer probe combination SEQ ID NO: 2, 3, 4 and the primer probe combination SEQ ID NO: 8, 9, 10 are assembled into a tube, and the reporter group R1 of its TaqMan MGB probe is selected FAM and R2 choose VIC / HEX, and use the sample extract in Example 2 to detect its chromosomal DNA (IS6110) and 16S rRNA in the same tube, and the results are completely consistent with the results in Example 2.

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Abstract

The invention belongs to the technical field of medical detection, in particular relates to a nucleic acid amplification detection method for distinguishing DNA from correspondingly transcribed RNA and provides a corresponding detection kit. The kit comprises pyrolysis solution, nucleic acid extracting solution, lysozyme solution, reverse transcription buffer solution, a reverse transcriptase system, tuberculosis DNA PCR reaction solution, tuberculosis RNA PCR reaction solution and the like, wherein selected primers aim at a section of ITS sequence or IS6110 sequence and a section of 16S rRNA sequence on ribosomal RNA respectively; and a probe is Tagman MGB probe preferably and labeled by different fluorescein. The kit comprises a glycosidase (UNG) component, can judge the relative 16S rRNA content of each bacterium and is used for judging the growth condition of mycobacterium tuberculosis in a sample so as to monitor infection state. The kit is simple, convenient and fast, can specifically detect the RNA and DNA and provides more comprehensive information for clinical use.

Description

technical field [0001] The invention belongs to the technical field of medical detection, and in particular relates to a nucleic acid amplification detection method and a detection kit for distinguishing DNA from corresponding RNA. Background technique [0002] Tuberculosis is a chronic wasting infectious disease that seriously affects human health. Due to factors such as immigration, drug abuse, co-infection of human immunodeficiency virus (HIV) and Mycobacterium tuberculosis, multidrug resistance of Mycobacterium tuberculosis, and zoonotic infectious diseases, there is a new infection every second in the world, and new cases occur every year. There are 8.5-10 million tuberculosis patients, 3 million people die from tuberculosis, and the new incidence rate is increasing year by year. Currently, about 1-2 billion people are infected with tuberculosis worldwide. This poses new challenges to global TB control. The dire situation with tuberculosis has prompted Global Fund ag...

Claims

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Application Information

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IPC IPC(8): C12Q1/68G01N21/64
Inventor 周科隆袁青王缦
Owner SHANGHAI KEHUA BIO ENG
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