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Specific sequence characterized amplified region (SCAR) marker for Trialeurodes vaporariorum, specific primers, and quick molecular identification method

A technology for labeling primers and whitefly, applied in the field of molecular biology, can solve the problem of not being able to identify molecular markers at the same time, and achieve the effects of rapid and accurate identification, cheap identification and high sensitivity

Inactive Publication Date: 2012-07-04
INST OF VEGETABLE & FLOWERS CHINESE ACAD OF AGRI SCI
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, there is currently no molecular marker that can simultaneously identify Type B, Type Q whitefly and greenhouse whitefly

Method used

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  • Specific sequence characterized amplified region (SCAR) marker for Trialeurodes vaporariorum, specific primers, and quick molecular identification method
  • Specific sequence characterized amplified region (SCAR) marker for Trialeurodes vaporariorum, specific primers, and quick molecular identification method
  • Specific sequence characterized amplified region (SCAR) marker for Trialeurodes vaporariorum, specific primers, and quick molecular identification method

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0049] Example 1 Single Whitefly Pest DNA Extraction

[0050] Genomic DNA was extracted using Genome Extraction Kit from Biotek Technology Co., Ltd., and the specific operations were as follows: (1) Place the single-headed whitefly on the Parafilm membrane dripped with 10 μL of lysate, and use the bottom of a 0.2 mL PCR tube as a uniform sample. Grind the homogenizer thoroughly, wash the homogenizer twice with another 20 μL of lysate, combine and mix; (2) Transfer to a 1.5 mL centrifuge tube with a micropipette, add 2 μL proteinase K, mix well, and place in a water bath at 55 °C for 4 hours Or overnight; (3) Centrifuge for a few seconds, add 2.5 μL of RNase, and place in a 37°C oven for 15-30 minutes; (4) Take out the above sample, let it cool to room temperature, add 25 μL of protein precipitation solution, and shake at high speed on a vortex shaker for 25 seconds; (5) Ice bath for 5 minutes to precipitate protein; centrifuge at room temperature, 13000r / min, centrifuge for 5 ...

Embodiment 2

[0051] Embodiment 2RAPD amplification

[0052] Using the genomic DNA of the test sample in the above materials and methods as a template, 60 random primers were used for random amplification, and the screened specific bands and corresponding amplification primers were recorded, and these bands were labeled. The total volume of amplification is 20 μL, including 10 μL 2×Mix, 1 μL DNA template, 3 μL RAPD primer (10 mM) and 6 μL dd H 2 O. The PCR reaction program was as follows: first, 94°C pre-denaturation for 4 min, followed by 40 cycles, including 94°C for 1 min, 37°C for 50 s, 72°C for 1 min and 35 s, and finally 72°C for 10 min. Take 6 μL of the PCR amplification product of each sample and load it on electrophoresis.

[0053] In RAPD random amplification, it was found that when OPA-17 primer was amplified, it showed strong species specificity for greenhouse whitefly, and a 620bp DNA band appeared in greenhouse whitefly, and the specific band was very bright , and appeared ...

Embodiment 3

[0054] Example 3 Recovery Cloning of Specific Amplified Products, SCAR Primer Design and PCR Amplification

[0055] Mark the specific bands found in the greenhouse whitefly samples in the RAPD amplification results. The specific band was recovered on agarose gel electrophoresis, purified using a DNA purification kit (Biteke, Beijing), and the purified fragment was connected to the pEASY-T1 vector (Quanjin, Beijing) and transformed into TOP10 On the competent cells, culture them upside down at 37°C overnight, pick white positive clones, add them to LB liquid medium for shaking culture at 37°C overnight, and finally use the plasmid extraction kit from Beijing Biotek Biotechnology Co., Ltd. to extract the plasmids, positive plasmids After being amplified and verified by the forward and reverse primers of the universal primer M13, it was sent to Beijing Jiaoqingke Bioengineering Co., Ltd. for sequencing.

[0056] The sequencing result is shown in SEQ ID NO.1:

[0057] gaccgcttgt...

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Abstract

The invention relates to the field of molecular biology, in particular to a specific sequence characterized amplified region (SCAR) marker for Trialeurodes vaporariorum, specific primers, and a quick molecular identification method. According to the specific SCAR marker for the Trialeurodes vaporariorum, the nucleotide sequence of the specific SCAR marker is shown as SEQ ID NO.1. The invention also relates to probes hybridized with the specific SCAR marker for the Trialeurodes vaporariorum, or annealing marker primer pairs for the specific SCAR marker. The quick molecular identification method for the Trialeurodes vaporariorum comprises a step of hybridizing by using the specific SCAR marker probes for the Trialeurodes vaporariorum or performing polymerase chain reaction (PCR) amplification by using the annealing specific primers. The SCAR molecular marker has the advantages of high repeatability, high specificity, high sensitivity and the like, and can quickly and accurately identifythe Trialeurodes vaporariorum at low cost. The SCAR molecular marker can quickly and cheaply identify the Trialeurodes vaporariorum in fields quickly, and has important significance for pertinently controlling the Trialeurodes vaporariorum in the fields.

Description

technical field [0001] The invention relates to the field of molecular biology, in particular to a greenhouse whitefly specific SCAR marker, a specific primer and a rapid molecular identification method. Background technique [0002] Greenhouse whitefly (Trialeurodes vaporariorum) is a worldwide disastrous pest, and more than 900 species of host plants have been reported (Kirk et al., 2000). It uses adults and nymphs to suck the juice of the host plant, causing the leaves to fade, turn yellow, and wilt, and can secrete a large amount of honeydew, polluting the fruits and leaves. More importantly, the spread of plant virus diseases, such as cucumber yellowing, tomato chlorosis, etc., can cause dry leaves and plant death in severe cases. It broke out in northern my country in the mid-1970s, and has been a major pest in northern my country since then (Zhu Guoren et al., Chinese Vegetables, 2006 (6): 49-51). Especially in recent decades, profound changes have taken place in th...

Claims

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Application Information

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IPC IPC(8): C12Q1/68C12N15/11
Inventor 王少丽王金娜张友军吴青君闫文茜谢文
Owner INST OF VEGETABLE & FLOWERS CHINESE ACAD OF AGRI SCI
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