Peach ssap molecular marker primer combination, molecular marker combination and its application in genetic diversity analysis of peach varieties
A primer combination and molecular marker technology, applied in the field of molecular biology, can solve problems such as the large heterogeneity of retrotransposon primers, and the lack of reports on the application of genetic diversity analysis of SSAP molecular marker technology
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Embodiment 1
[0065] The application of SSAP molecular markers in peach variety genetic diversity analysis, its steps include:
[0066] (1) Primer design and synthesis: The entire genome sequence of peach was analyzed using the retrotransposon prediction software LTR_STRUCversion1.1. In the predicted result data, the retrotransposons whose LTR sequence similarity at both ends is greater than 99% are preferentially selected, and the downstream primers required for selective amplification in the SSAP molecular marker are designed by using PrimerPremier5.0 and referring to the sequence of the 3' LTR region. When designing primers, only choose to start from the first base at the 5' end of the region, and replace the first base with a mismatched base. The length of the primer is designed to be 19-23bp, and three Selective bases are GAG, CGT and GGT to form different primer combinations. At the same time, 18bp universal primer sequence (M13) TGTAAAACGACGGCCAGT is added to the 5' end of Tail, ...
Embodiment 2
[0089] The application of 10 SSAP molecular marker combinations in the genetic diversity analysis of 8 ornamental peach varieties, the steps include:
[0090] (1) Primer synthesis: All the primers shown in Table 1 were synthesized.
[0091] The relevant feature information of 8 ornamental peach varieties used in the embodiment 2 of table 3
[0092] serial number
Variety
branch type
petal color
8 --> 1
Jinling Jintao
Straight branch type
Variegated
2
white peach
Straight branch type
White
3
Pretty in Pink
Straight branch type
pink
4
Human face peach
Straight branch type
pink
5
red leaf peach
Straight branch type
red
6
five treasures
Straight branch type
Variegated
7
mandarin duck weeping branch
Weeping type
Variegated
8
Sprinkle Red Peach
Straight branch type
Variegated
[0093] (2) 8 orn...
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