Long-chain non-coding RNA sequence for early diagnosis of human lung adenocarcinoma, preparation and application
A long-chain non-coding and early diagnosis technology, applied in the field of short hairpin fragments, can solve the problems of affecting the effect of gene therapy, high instability, and effective treatment plan, and achieve the goal of improving the effect of gene therapy, simple steps and high efficiency Effect
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Embodiment 1
[0074] Example 1 Accurate full-length cDNA sequence of linc00857 obtained by RACE method
[0075] This embodiment provides a method for obtaining the precise and full-length cDNA sequence of linc00857. The precise and full-length cDNA sequence of linc00857 is the long-chain non-coding RNA, which specifically includes the following steps:
[0076] 1) Design a set of gene-specific primers according to the known sequence of linc00857 in the Mitranscriptome database, and name them successively as GSP1, GSP2, GSP3, GSP4, GSP5, GSP6. The primer set can specifically recognize linc00857, and each primer set in the primer set Primer sequences are shown in Table 1;
[0077] Table 1 The primer set that specifically recognizes linc00857
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[0080] 2) Use the Trizol method to extract the total RNA of lung cancer cell line NCI-H199, and use Thermo Fisher's The reverse transcription kit of III First-Strand Synthesis System uses oligo dT as a reverse transcription prime...
Embodiment 2
[0088] Analysis of the conservation, transcriptional activity and coding ability of the long-chain non-coding RNA described in Example 2
[0089] In this example, the conservation, transcriptional activity, and coding ability of the long-chain non-coding RNA (linc00857 precise full-length cDNA sequence) were analyzed using bioinformatics methods. The specific analysis methods are as follows:
[0090] 1. Using the Roadmap and ENCODE databases (https: / / www.encodeproject.org / ), obtain the data of H3K4me3, H3k36me3 and H3K27ac in normal lung tissue, and the data of H3K4me3, H3k36me3 and H3K27ac in lung adenocarcinoma cell line A549; The obtained data are displayed on the UCSC website (http: / / genome.ucsc.edu / ), and H3K4me3, H3k36me3 and H3K27ac are obtained in the long non-coding RNA ( Figure 5 "linc00857") gene promoter region enrichment ( Figure 5 ), the GEO accession numbers are GSM906395 (H3K27ac, lung), GSM915336 (H3K4me3, lung), GSM956014 (H3K36me3, lung), GSM1003561 (H3K4...
Embodiment 3
[0093] Example 3 Detection of the expression of long-chain non-coding RNA in different lung adenocarcinoma cell lines
[0094] This embodiment provides a primer pair, which is used to detect the expression level of the long-chain non-coding RNA in cells and tissues; the primer pair includes upstream primer linc00857-F and downstream primer linc00857-R The nucleotide sequence of the upstream primer linc00857-F is shown in SEQ ID NO.8, and the nucleotide sequence of the downstream primer linc00857-R is shown in SEQ ID NO.9.
[0095] This embodiment provides a kit for early diagnosis of human lung adenocarcinoma, including the aforementioned primer pair.
[0096] The kit for the early diagnosis of human lung adenocarcinoma comprises: Green dye, 10 μL; the upstream primer linc00857-F, 10 μM, 0.4 μL; the downstream primer linc00857-R, 10 μM, 0.4 μL; ROX, 0.4 μL; dH 2 O, 6.8 μL.
[0097] This embodiment provides a qRT-PCR reaction system for early diagnosis of human lung adenoca...
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