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Long-chain non-coding RNA sequence for early diagnosis of human lung adenocarcinoma, preparation and application

A long-chain non-coding and early diagnosis technology, applied in the field of short hairpin fragments, can solve the problems of affecting the effect of gene therapy, high instability, and effective treatment plan, and achieve the goal of improving the effect of gene therapy, simple steps and high efficiency Effect

Inactive Publication Date: 2017-07-21
SUZHOU INST OF BIOMEDICAL ENG & TECH CHINESE ACADEMY OF SCI
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  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, the technical solutions in the above documents still have the following defects: 1. The accurate full-length sequence of linc00857 is of great significance for studying the function of linc00857 in the occurrence and development of lung adenocarcinoma, but the above-mentioned documents fail to provide the accurate full-length sequence of linc00857 sequence, it is difficult to meet the requirements of functional research in the occurrence and development of lung adenocarcinoma; 2. The molecular marker linc00857 provided in the above literature has few RNA interference targets, which cannot provide a more effective treatment plan and affects its gene therapy effect, as mentioned above Although the literature provides siRNA sequences and shRNA plasmids for interfering with linc00857 in lung adenocarcinoma cells, the interference efficiency of shRNA plasmids is low, less than 50%. Although siRNA can achieve higher interference efficiency, it is the same as shRNA Compared with interference, siRNA can only perform transient interference on cells, and is highly unstable and prone to off-target effects. This off-target effect seriously affects the application of siRNA in clinical gene therapy of tumors.

Method used

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  • Long-chain non-coding RNA sequence for early diagnosis of human lung adenocarcinoma, preparation and application
  • Long-chain non-coding RNA sequence for early diagnosis of human lung adenocarcinoma, preparation and application
  • Long-chain non-coding RNA sequence for early diagnosis of human lung adenocarcinoma, preparation and application

Examples

Experimental program
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Embodiment 1

[0074] Example 1 Accurate full-length cDNA sequence of linc00857 obtained by RACE method

[0075] This embodiment provides a method for obtaining the precise and full-length cDNA sequence of linc00857. The precise and full-length cDNA sequence of linc00857 is the long-chain non-coding RNA, which specifically includes the following steps:

[0076] 1) Design a set of gene-specific primers according to the known sequence of linc00857 in the Mitranscriptome database, and name them successively as GSP1, GSP2, GSP3, GSP4, GSP5, GSP6. The primer set can specifically recognize linc00857, and each primer set in the primer set Primer sequences are shown in Table 1;

[0077] Table 1 The primer set that specifically recognizes linc00857

[0078]

[0079]

[0080] 2) Use the Trizol method to extract the total RNA of lung cancer cell line NCI-H199, and use Thermo Fisher's The reverse transcription kit of III First-Strand Synthesis System uses oligo dT as a reverse transcription prime...

Embodiment 2

[0088] Analysis of the conservation, transcriptional activity and coding ability of the long-chain non-coding RNA described in Example 2

[0089] In this example, the conservation, transcriptional activity, and coding ability of the long-chain non-coding RNA (linc00857 precise full-length cDNA sequence) were analyzed using bioinformatics methods. The specific analysis methods are as follows:

[0090] 1. Using the Roadmap and ENCODE databases (https: / / www.encodeproject.org / ), obtain the data of H3K4me3, H3k36me3 and H3K27ac in normal lung tissue, and the data of H3K4me3, H3k36me3 and H3K27ac in lung adenocarcinoma cell line A549; The obtained data are displayed on the UCSC website (http: / / genome.ucsc.edu / ), and H3K4me3, H3k36me3 and H3K27ac are obtained in the long non-coding RNA ( Figure 5 "linc00857") gene promoter region enrichment ( Figure 5 ), the GEO accession numbers are GSM906395 (H3K27ac, lung), GSM915336 (H3K4me3, lung), GSM956014 (H3K36me3, lung), GSM1003561 (H3K4...

Embodiment 3

[0093] Example 3 Detection of the expression of long-chain non-coding RNA in different lung adenocarcinoma cell lines

[0094] This embodiment provides a primer pair, which is used to detect the expression level of the long-chain non-coding RNA in cells and tissues; the primer pair includes upstream primer linc00857-F and downstream primer linc00857-R The nucleotide sequence of the upstream primer linc00857-F is shown in SEQ ID NO.8, and the nucleotide sequence of the downstream primer linc00857-R is shown in SEQ ID NO.9.

[0095] This embodiment provides a kit for early diagnosis of human lung adenocarcinoma, including the aforementioned primer pair.

[0096] The kit for the early diagnosis of human lung adenocarcinoma comprises: Green dye, 10 μL; the upstream primer linc00857-F, 10 μM, 0.4 μL; the downstream primer linc00857-R, 10 μM, 0.4 μL; ROX, 0.4 μL; dH 2 O, 6.8 μL.

[0097] This embodiment provides a qRT-PCR reaction system for early diagnosis of human lung adenoca...

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Abstract

The invention discloses an overall-length cDNA sequence for long-chain non-coding RNA, preparation and application. The cDNA sequence of the long-chain non-coding RNA is as shown in SEQ ID NO. 1, the overall-length gene sequence of accurate linc00857 is cloned for the first time, a foundation is laid for research of functions of linc00857 in a generation and development process of adenocarcinoma of lung, high expression of the long-chain non-coding RNA in the adenocarcinoma of lung is obtained by analysis, expression in normal lung tissues is relatively low, expression of the long-chain non-coding RNA is remarkably related to progression of the adenocarcinoma of lung, therefore, the invention further discloses application of the long-chain non-coding RNA in preparation of products for diagnosing or treating the adenocarcinoma of lung, for example, a short hairpin fragment of an RNAi target site of the long-chain non-coding RNA and expression of recombinant plasmids of transcribed short hairpin RNA in cells of the adenocarcinoma of lung can obviously degrade cell endogenous long-chain non-coding RNA and inhibit malignant growth of the cells of the adenocarcinoma of lung.

Description

technical field [0001] The invention belongs to the field of tumor molecular biology, and specifically relates to a precise cDNA sequence of a lung adenocarcinoma-specific long-chain non-coding RNA, a preparation method of the sequence, a short hairpin fragment for RNA interference of the gene, and an application thereof. Background technique [0002] Lung cancer is one of the cancers with the highest morbidity and mortality in the world, and it shows an increasing trend year by year. In my country, the morbidity and mortality of lung cancer also rank first among all cancers. Small cell lung cancer (Small Cell Lung Cancer, SCLC) accounts for about 15% of lung cancer patients, and non-small cell lung cancer (Non-Small Cell Lung Cancer, NSCLC) accounts for about 80%. Lung adenocarcinoma is a type of non-small cell lung cancer. Most adenocarcinomas originate from the smaller bronchi and are peripheral lung cancers, which tend to occur in women and non-smokers. The five-year su...

Claims

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Application Information

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IPC IPC(8): C12N15/113C12N15/11C12N15/63C12Q1/68A61K45/00A61P35/00
CPCC12N15/113A61K45/00C12N15/63C12N2310/10C12N2310/14C12Q1/6886C12Q2600/158C12Q2600/178
Inventor 高山高弈航张常王亮
Owner SUZHOU INST OF BIOMEDICAL ENG & TECH CHINESE ACADEMY OF SCI
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